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(-) Description

Title :  HUMAN ANGIOGENIN IN COMPLEX WITH SULPHATE ANIONS AT A BASIC SOLUTION
 
Authors :  D. S. M. Chatzileontiadou, D. D. Leonidas
Date :  12 Nov 15  (Deposition) - 17 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. S. Chatzileontiadou, V. G. Tsirkone, K. Dossi, A. G. Kassouni, P. G. Liggri, A. L. Kantsadi, G. A. Stravodimos, N. A. Balatsos, V. T. Skamnaki, D. D. Leonidas
The Ammonium Sulfate Inhibition Of Human Angiogenin.
Febs Lett. V. 590 3005 2016
PubMed-ID: 27483019  |  Reference-DOI: 10.1002/1873-3468.12335

(-) Compounds

Molecule 1 - ANGIOGENIN
    Chains: A
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET
    Expression System Taxid: 469008
    Expression System Variant: GOLD
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 26-145
    Gene: ANG, RNASE5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RIBONUCLEASE 5,RNASE 5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:24 , HIS A:65 , ARG A:66 , HOH A:329binding site for residue SO4 A 201
2AC2SOFTWAREASN A:49 , LYS A:50 , ARG A:51binding site for residue SO4 A 202
3AC3SOFTWAREARG A:32 , ARG A:33binding site for residue SO4 A 203
4AC4SOFTWARETYR A:6 , LYS A:50 , LYS A:54 , HOH A:313binding site for residue SO4 A 204
5AC5SOFTWAREGLY A:99 , PHE A:100 , HOH A:337 , HOH A:360 , HOH A:367binding site for residue GOL A 205

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:26 -A:81
2A:39 -A:92
3A:57 -A:107

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:37 -Pro A:38
2Pro A:90 -Pro A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EPZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EPZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5EPZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.......hhhhhhhhhhhh........eeeee..hhhhhhhhhh...eeee...eeee...eeeeeeeee........eeeeeeeee..eeeee..eeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5epz A   2 DNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENGLPVHLDQSIFR 121
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EPZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EPZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EPZ)

(-) Gene Ontology  (54, 54)

Asymmetric/Biological Unit(hide GO term definitions)

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  5epz
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  ANGI_HUMAN | P03950
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  3.1.27.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANGI_HUMAN | P03950: 1a4y 1ang 1awz 1b1e 1b1i 1b1j 1gv7 1h0d 1h52 1h53 1hby 1k58 1k59 1k5a 1k5b 1un3 1un4 1un5 2ang 4ahd 4ahe 4ahf 4ahg 4ahh 4ahi 4ahj 4ahk 4ahl 4ahm 4ahn 4aoh 4b36 5eop 5eqo 5m9a 5m9c 5m9g 5m9j 5m9m 5m9p 5m9q 5m9r 5m9s 5m9t 5m9v

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5EPZ)