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(-) Description

Title :  HUMAN ANGIOGENIN ALS VARIANT F100I
 
Authors :  W. J. Bradshaw, S. Rehman, T. T. K. Pham, N. Thiyagarajan, R. L. Lee, V. Subramanian, K. R. Acharya
Date :  02 Nov 16  (Deposition) - 22 Feb 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Als, Rnase, Angiogenesis, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. J. Bradshaw, S. Rehman, T. T. Pham, N. Thiyagarajan, R. L. Lee, V. Subramanian, K. R. Acharya
Structural Insights Into Human Angiogenin Variants Implicated In Parkinson'S Disease And Amyotrophic Lateral Sclerosis.
Sci Rep V. 7 41996 2017
PubMed-ID: 28176817  |  Reference-DOI: 10.1038/SREP41996

(-) Compounds

Molecule 1 - ANGIOGENIN
    Chains: A, B
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: ANG, RNASE5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RIBONUCLEASE 5,RNASE 5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
2TAR2Ligand/IonD(-)-TARTARIC ACID
3TLA2Ligand/IonL(+)-TARTARIC ACID
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
2TAR1Ligand/IonD(-)-TARTARIC ACID
3TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
2TAR1Ligand/IonD(-)-TARTARIC ACID
3TLA1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:8 , GLN A:12 , HIS A:13 , LYS A:40 , HIS A:114 , GLN A:117 , TLA A:202 , HOH A:308 , HOH A:369 , ARG B:31 , PRO B:91 , CYS B:92 , HOH B:305binding site for residue TAR A 201
2AC2SOFTWAREGLN A:12 , HIS A:13 , LYS A:40 , HIS A:114 , LEU A:115 , GLN A:117 , TAR A:201 , HOH A:339 , ARG B:31 , PRO B:91binding site for residue TLA A 202
3AC3SOFTWAREASP A:2 , SER A:4 , ARG A:101 , ILE A:119 , ARG A:122 , PRO A:123 , HOH A:318 , HIS B:84 , GLN B:93 , HOH B:321binding site for residue PEG A 203
4AC4SOFTWAREPRO A:90 , PRO A:91 , GLN B:12 , HIS B:13 , LYS B:40 , HIS B:114 , LEU B:115 , GLN B:117 , TLA B:202 , HOH B:303 , HOH B:317 , HOH B:338 , HOH B:345 , HOH B:352binding site for residue TAR B 201
5AC5SOFTWAREARG A:31 , PRO A:91 , CYS A:92 , HIS B:8 , GLN B:12 , HIS B:13 , LYS B:40 , LEU B:115 , GLN B:117 , TAR B:201 , HOH B:320 , HOH B:344 , HOH B:352binding site for residue TLA B 202

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:26 -A:81
2A:39 -A:92
3A:57 -A:107
4B:26 -B:81
5B:39 -B:92
6B:57 -B:107

(-) Cis Peptide Bonds  (5, 6)

Asymmetric Unit
No.Residues
1Ser A:37 -Pro A:38
2Pro A:90 -Pro A:91
3Arg A:122 -Pro A:123
4Ser B:37 -Pro B:38
5Pro B:90 -Pro B:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M9R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M9R)

(-) Exons   (0, 0)

(no "Exon" information available for 5M9R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.......hhhhhhhhhhhh........eeeee..hhhhhhhhhh...eeee...eeee...eeeeeeee..........eeeeeeee..eeeee..eeeee.hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m9r A   2 DNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGIRNVVVACENGLPVHLDQSIFRRP 123
                                    11        21        31        41        51        61        71        81        91       101       111       121  


Chain B from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.......hhhhhhhhhhhh........eeeee..hhhhhhhhhh...eeee...eeee...eeeeeeee..........eeeeeeee..eeeee..eeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m9r B   1 QDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSPCKDINTFIHGNKRSIKAICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGIRNVVVACENGLPVHLDQSIFR 121
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M9R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M9R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M9R)

(-) Gene Ontology  (54, 54)

Asymmetric Unit(hide GO term definitions)

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  5m9r
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  3.1.27.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANGI_HUMAN | P03950: 1a4y 1ang 1awz 1b1e 1b1i 1b1j 1gv7 1h0d 1h52 1h53 1hby 1k58 1k59 1k5a 1k5b 1un3 1un4 1un5 2ang 4ahd 4ahe 4ahf 4ahg 4ahh 4ahi 4ahj 4ahk 4ahl 4ahm 4ahn 4aoh 4b36 5eop 5epz 5eqo 5m9a 5m9c 5m9g 5m9j 5m9m 5m9p 5m9q 5m9s 5m9t 5m9v

(-) Related Entries Specified in the PDB File

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