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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SNX27 PDZ DOMAIN BOUND TO THE PHOSPHORYLATED C-TERMINAL 5HT4(A)R PDZ BINDING MOTIF
 
Authors :  B. M. Collins, T. Clairfeuille
Date :  06 Nov 15  (Deposition) - 07 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Endosome, Pdz Domain, Sorting Nexin, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Clairfeuille, C. Mas, A. S. Chan, Z. Yang, M. Tello-Lafoz, M. Chandra, J. Widagdo, M. C. Kerr, B. Paul, I. Merida, R. D. Teasdale, N. J. Pavlos, V. Anggono, B. M. Collins
A Molecular Code For Endosomal Recycling Of Phosphorylated Cargos By The Snx27-Retromer Complex.
Nat. Struct. Mol. Biol. V. 23 921 2016
PubMed-ID: 27595347  |  Reference-DOI: 10.1038/NSMB.3290

(-) Compounds

Molecule 1 - SORTING NEXIN-27
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PDZ DOMAIN (UNP RESIDUES 39-133)
    Gene: SNX27, MRT1
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: MAP-RESPONSIVE GENE PROTEIN,METHAMPHETAMINE-RESPONSIVE TRANSCRIPT 1 PROTEIN,PDZ-PROTEIN MRT1
 
Molecule 2 - SEP-LEU-GLU-SER-CYS-PHE
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 5EM9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EM9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EM9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EM9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EM9)

(-) Exons   (0, 0)

(no "Exon" information available for 5EM9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee.......eeeee........eee..eee....eeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhh....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5em9 A  38 SPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 133
                                    47        57        67        77        87        97       107       117       127      


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author .eeeee Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5em9 B 382 sLESCF 387
                            |     
                          382-SEP
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EM9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EM9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EM9)

(-) Gene Ontology  (33, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  5em9
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  5HT4R_HUMAN | Q13639
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  SNX27_RAT | Q8K4V4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SNX27_RAT | Q8K4V4: 3qdo 3qe1 3qgl 4p2a 4z8j 5elq 5ema 5emb

(-) Related Entries Specified in the PDB File

4z8j 5elq 5ema 5emb