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(-) Description

Title :  ACETYCHOLINESTERASE METHYLENE BLUE NO PEG
 
Authors :  O. Dym
Date :  06 Oct 15  (Deposition) - 30 Mar 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Dym, W. Song, C. Felder, E. Roth, V. Shnyrov, Y. Ashani, Y. Xu, R. P. Joosten, L. Weiner, J. L. Sussman, I. Silman
The Impact Of Crystallization Conditions On Structure-Based Drug Design: A Case Study On The Methylene Blue/Acetylcholinesterase Complex.
Protein Sci. V. 25 1096 2016
PubMed-ID: 26990888  |  Reference-DOI: 10.1002/PRO.2923

(-) Compounds

Molecule 1 - ACETYLCHOLINESTERASE
    Chains: A
    EC Number: 3.1.1.7
    Organism Common: PACIFIC ELECTRIC RAY
    Organism Scientific: TORPEDO CALIFORNICA
    Organism Taxid: 7787
    Synonym: ACHE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 18)

Asymmetric/Biological Unit (5, 18)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2DME1Ligand/IonDECAMETHONIUM ION
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SO410Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:70 , TRP A:84 , GLY A:118 , TYR A:121 , GLU A:199 , TRP A:279 , TYR A:334 , GLY A:441binding site for residue DME A 608
02AC2SOFTWAREHIS A:406 , ASN A:525 , GLN A:526binding site for residue SO4 A 609
03AC3SOFTWAREASN A:424 , HIS A:425 , ASN A:506 , THR A:507 , GLU A:508binding site for residue SO4 A 610
04AC4SOFTWAREPRO A:21 , VAL A:22 , LEU A:23 , LYS A:133 , TYR A:134binding site for residue SO4 A 611
05AC5SOFTWAREARG A:289 , SER A:359 , VAL A:360 , PRO A:361 , HIS A:362 , HIS A:398binding site for residue SO4 A 612
06AC6SOFTWARESER A:237 , ALA A:239 , GLU A:240 , ARG A:243binding site for residue SO4 A 613
07AC7SOFTWAREHIS A:513 , GLN A:514binding site for residue SO4 A 614
08AC8SOFTWARELYS A:346 , ASN A:382 , GLY A:384binding site for residue SO4 A 615
09AC9SOFTWARESER A:258 , ASP A:259binding site for residue SO4 A 616
10AD1SOFTWAREGLN A:68 , SER A:91 , GLU A:92 , PRO A:271binding site for residue SO4 A 617
11AD2SOFTWAREPRO A:213 , PRO A:302 , ASP A:342 , SER A:343 , GLU A:344binding site for residue SO4 A 618
12AD3SOFTWAREASN A:59 , SER A:61binding site for Mono-Saccharide NAG A 601 bound to ASN A 59
13AD4SOFTWAREASN A:416 , MAN A:607binding site for Mono-Saccharide NAG A 602 bound to ASN A 416
14AD5SOFTWARELYS A:413 , PHE A:414 , GLY A:415 , ASN A:457 , NAG A:602binding site for Poly-Saccharide residues NAG A 603 through MAN A 607 bound to ASN A 457

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:67 -A:94
2A:254 -A:265
3A:402 -A:521

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:103 -Pro A:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E4J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E4J)

(-) Exons   (0, 0)

(no "Exon" information available for 5E4J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:532
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.eeee....eeeeeeeee.....hhhhh............eee..................hhhhhh............eeeeee.......eeeeeee...........hhhhhhhhhhhhhh.eeee....hhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhh..hhhhh.eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhh......eeeeeee...hhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....................eeeee......eee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e4j A   4 SELLVNTKSGKVMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNPNREMSEDCLYLNIWVPSPRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPVIDGEFFPTSLESMLNSGNFKKTQILLGVNKDEGSFFLLYGAPGFSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMDDNNGIKNRDGLDDIVGDHNVICPLMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKELNYTAEEEALSRRIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQFLPKLLNAT 535
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E4J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E4J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E4J)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  5e4j
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  ACES_TETCF | P04058
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  3.1.1.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACES_TETCF | P04058: 1acj 1acl 1amn 1ax9 1cfj 1dx6 1e3q 1e66 1ea5 1eea 1eve 1fss 1gpk 1gpn 1gqr 1gqs 1h22 1h23 1hbj 1jga 1jgb 1jjb 1oce 1odc 1qid 1qie 1qif 1qig 1qih 1qii 1qij 1qik 1qim 1qti 1som 1u65 1ut6 1vot 1vxo 1vxr 1w4l 1w6r 1w75 1w76 1zgb 1zgc 2ace 2ack 2bag 2c4h 2c58 2c5f 2c5g 2cek 2ckm 2cmf 2dfp 2j3d 2j3q 2j4f 2v96 2v97 2v98 2va9 2vja 2vjb 2vjc 2vjd 2vq6 2vt6 2vt7 2w6c 2wfz 2wg0 2wg1 2wg2 2xi4 3ace 3gel 3i6m 3i6z 3m3d 3zv7 4ace 4tvk 4w63 4x3c 5bwb 5bwc 5dlp 5e2i 5e4t 5ehx 5ei5 5ih7

(-) Related Entries Specified in the PDB File

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