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(-) Description

Title :  CRYSTAL STRUCTURE OF FIS BOUND TO 27BP DNA F1-8G (AAATTGGTTTGAATTTTGAGCCAATTT)
 
Authors :  S. P. Hancock, D. Cascio, R. C. Johnson
Date :  03 Oct 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.66
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein-Dna Complex, Hth Domain, Dna Bending, Indirect Recognition, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. P. Hancock, S. Stella, D. Cascio, R. C. Johnson
Dna Sequence Determinants Controlling Affinity, Stability And Shape Of Dna Complexes Bound By The Nucleoid Protein Fis.
Plos One V. 11 50189 2016
PubMed-ID: 26959646  |  Reference-DOI: 10.1371/JOURNAL.PONE.0150189

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN FIS
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FIS, B3261, JW3229
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: FACTOR-FOR-INVERSION STIMULATION PROTEIN,HIN RECOMBINATIONAL ENHANCER-BINDING PROTEIN
 
Molecule 2 - DNA (27-MER)
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA (27-MER)
    Chains: D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E3L)

(-) Sites  (0, 0)

(no "Site" information available for 5E3L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E3L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E3L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E3L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E3L)

(-) Exons   (0, 0)

(no "Exon" information available for 5E3L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....eeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  5e3l A  8 SDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
                                    17        27        37        47        57        67        77        87        97 


Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.eeeee.....eeeeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  5e3l B  1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
                                    10        20        30        40        50        60        70        80        90        


Chain C from PDB  Type:DNA  Length:27
                                                          
                  5e3l C  1 AAATTGGTTTGAATTTTGAGCCAATTT 27
                                    10        20       


Chain D from PDB  Type:DNA  Length:27
                                                          
                  5e3l D  1 AAATTGGCTCAAAATTCAAACCAATTT 27
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E3L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E3L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E3L)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIS_ECOLI | P0A6R3: 1etk 1eto 1etq 1etv 1etw 1etx 1ety 1f36 1fia 1fip 3fis 3iv5 3jr9 3jra 3jrb 3jrc 3jrd 3jre 3jrf 3jrg 3jrh 3jri 4fis 5ds9 5dtd 5e3m 5e3n 5e3o

(-) Related Entries Specified in the PDB File

5ds9 5dtd 5e3m 5e3n 5e3o