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(-) Description

Title :  CRYSTAL STRUCTURE OF JAMJ ENOYL REDUCTASE (APO FORM)
 
Authors :  D. Khare, J. L. Smith
Date :  11 Sep 15  (Deposition) - 18 Nov 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Enoyl Reductase, Polyketide Synthase, Nadph, Cyclopropane, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Khare, W. A. Hale, A. Tripathi, L. Gu, D. H. Sherman, W. H. Gerwick, K. Hakansson, J. L. Smith
Structural Basis For Cyclopropanation By A Unique Enoyl-Acy Carrier Protein Reductase.
Structure V. 23 2213 2015
PubMed-ID: 26526850  |  Reference-DOI: 10.1016/J.STR.2015.09.013

(-) Compounds

Molecule 1 - JAMJ
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 260-594
    Organism Scientific: LYNGBYA MAJUSCULA
    Organism Taxid: 158786

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:141 , ASN A:145 , ASP A:281 , HOH A:554 , HOH A:587 , LYS B:62binding site for residue GOL A 401
2AC2SOFTWAREARG A:46 , ILE A:134 , LYS A:251 , ASP A:273 , HOH A:546binding site for residue GOL A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DOV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DOV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DOV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DOV)

(-) Exons   (0, 0)

(no "Exon" information available for 5DOV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhh.eeeee..........eeeeeeeee.hhhhhhhhhh.hhhhhhhhh...hhhhh....eeeeeeeee...........eeeee........eeeehhh.eee.....hhhhhh.hhhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh...eeee....hhhhhhhhhh....eeeeee.....hhhhhhhhheeeeeeeee.......hhhhhhhhh...eeee.hhhhhhhhh.hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dov A   3 SQPVQLKIASYGLLKNLTWVSLENQVPGVGEVKVQIQAVPVNFRDILNALGMLQEHNQTKLGITSVDHLTFGFEAVGVIVGVGLGVSQWQIGDEVMVIGCHDAFSSFIICSPNNLVAKPANLKLIEAATIPIPFFTAYHGLYNLAKIQSGERVLIHAASGGTGQAAIQLAQFWGAEVFATTSPQKMAVLREQGIKHVMNSRTTEFANEIRELTQGKGVDVIFNSLTHGEYIQKNLDVLALEGRYIEISKRKIWSHSQVAQKRSDIKYFPFDLLEEFNRDNQLYYQIWKKLIQCFENKELHPLVYKTFPNEDIVEAFRYLQRSKHIGRVVVTMP 335
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332   


Chain B from PDB  Type:PROTEIN  Length:338
                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee....hhh.eeeee..........eeeeeeeee.hhhhhhhhh..hhhhhhhhhh..hhhhh....eeeeeeeee...........eeeee........eeeehhh.ee......hhhhhh.hhhhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhh..eeeeeehhhhhhhhhhh...eeee....hhhhhhhhhh....eeeeee......hhhhhhh.eeeeeeeee.......hhhhhhhhh...eeee.hhhhhhhhh.hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dov B  -2 SNATTSQPVQLKIASYGLLKNLTWVSLENQVPGVGEVKVQIQAVPVNFRDILNALGMLQEHNQTKLGITSVDHLTFGFEAVGVIVGVGLGVSQWQIGDEVMVIGCHDAFSSFIICSPNNLVAKPANLKLIEAATIPIPFFTAYHGLYNLAKIQSGERVLIHAASGGTGQAAIQLAQFWGAEVFATTSPQKMAVLREQGIKHVMNSRTTEFANEIRELTQGKGVDVIFNSLTHGEYIQKNLDVLALEGRYIEISKRKIWSHSQVAQKRSDIKYFPFDLLEEFNRDNQLYYQIWKKLIQCFENKELHPLVYKTFPNEDIVEAFRYLQRSKHIGRVVVTMP 335
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DOV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DOV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DOV)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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        Q6E7K0_9CYAN | Q6E7K0: 5doz

(-) Related Entries Specified in the PDB File

5doz 5dp1 5dp2