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(-) Description

Title :  CRYSTAL STRUCTURE OF TETRAHYMENA P45N AND P19
 
Authors :  B. Wan, T. Tang, J. Wu, M. Lei
Date :  11 Sep 15  (Deposition) - 25 Nov 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Telomerase, Ob Fold, Tetrahymena, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Wan, T. Tang, H. Upton, J. Shuai, Y. Zhou, S. Li, J. Chen, J. S. Brunzelle, Z. Zeng, K. Collins, J. Wu, M. Lei
The Tetrahymena Telomerase P75-P45-P19 Subcomplex Is A Unique Cst Complex
Nat. Struct. Mol. Biol. V. 22 1023 2015
PubMed-ID: 26551074  |  Reference-DOI: 10.1038/NSMB.3126

(-) Compounds

Molecule 1 - TELOMERASE-ASSOCIATED PROTEIN 19
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TAP19
    Organism Scientific: TETRAHYMENA THERMOPHILA
    Organism Taxid: 5911
    Synonym: P19
 
Molecule 2 - TELOMERASE ASSOCIATED PROTEIN P45
    Chains: E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: OB FOLD, UNP RESIDUES 2-129
    Gene: TAP45
    Organism Scientific: TETRAHYMENA THERMOPHILA
    Organism Taxid: 5911
    Synonym: P45

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C   G 
Biological Unit 4 (1x):    D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DOI)

(-) Sites  (0, 0)

(no "Site" information available for 5DOI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DOI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DOI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DOI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DOI)

(-) Exons   (0, 0)

(no "Exon" information available for 5DOI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhh..........eeeeeeeeeeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...........eeeeee..eeeeee....ee........eeeeeeeeee.....eeeeeeeee.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5doi A   7 NFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKIKNLSSKELAKNKIFKFLSEYNKKQDELSHDYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTLQLLQAASEIN 162
                                    16        26        36        46        56        66        76    ||  89        99       109       119       129       139       149       159   
                                                                                                     81|                                                                             
                                                                                                      85                                                                             


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhh..........eeeeeeeeeeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhh.............eeeeee..eeeeee....ee........eeeeeeeeee.....eeeeeeeee.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5doi B   7 NFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKIKNLSSKELAKNKIFKFLSEYNKKQDELSHDYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTLQLLQAASEIN 162
                                    16        26        36        46        56        66        76    ||  89        99       109       119       129       139       149       159   
                                                                                                     81|                                                                             
                                                                                                      85                                                                             


Chain C from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhh..........eeeeeeeeeeeeehhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...........eeeeee..eeeeee....ee........eeeeeeeeee.....eeeeeeeee.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5doi C   7 NFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKIKNLSSKELAKNKIFKFLSEYNKKQDELSHDYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTLQLLQAASEIN 162
                                    16        26        36        46        56        66        76    ||  89        99       109       119       129       139       149       159   
                                                                                                     81|                                                                             
                                                                                                      85                                                                             


Chain D from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhh..........eeeeeeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhh.............eeeeee..eeeeee....ee........eeeeeeeeee.....eeeeeeeee.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5doi D   7 NFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKIKNLSSKELAKNKIFKFLSEYNKKQDELSHDYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTLQLLQAASEIN 162
                                    16        26        36        46        56        66        76    ||  89        99       109       119       129       139       149       159   
                                                                                                     81|                                                                             
                                                                                                      85                                                                             


Chain E from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhh.....eeeeeeeeee..eeeee....eeeee.......eeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5doi E   4 NFELVFLKELPSLPDFSKVCFTGLILSFSKIAIIQDSTGEAELFLDISVFKAITGIGVLKKQVCKIIVERFRIIHSADEEMLQYLLIQKYKLS 125
                                    13        23        48        58     || 76        86||     102       112       122   
                                                       32|              64|            87|                               
                                                        48               73             94                               


Chain F from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhh....eeeeeeeeeee..eeeee....eeeee.......eeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5doi F   4 NFELVFLKELPSLPDFSKVCFTGLILSFSKIAIIQDSTGEAELFLDISVFKAITGIGVLKKQVCKIIVERFRIIHSADEEMLQYLLIQKYKLS 125
                                    13        23        48        58     || 76        86||     102       112       122   
                                                       32|              64|            87|                               
                                                        48               73             94                               


Chain G from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhh....eeeeeeeeeee..eeeee....eeeee.......eeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5doi G   4 NFELVFLKELPSLPDFSKVCFTGLILSFSKIAIIQDSTGEAELFLDISVFKAITGIGVLKKQVCKIIVERFRIIHSADEEMLQYLLIQKYKLS 125
                                    13        23        48        58     || 76        86||     102       112       122   
                                                       32|              64|            87|                               
                                                        48               73             94                               


Chain H from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.............eeeeeeeeeee..eeeee....eeeee.......eeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 5doi H   4 NFELVFLKELPSLPDFSKVCFTGLILSFSKIAIIQDSTGEAELFLDISVFKAITGIGVLKKQVCKIIVERFRIIHSADEEMLQYLLIQKYKLS 125
                                    13        23        48        58     || 76        86||     102       112       122   
                                                       32|              64|            87|                               
                                                        48               73             94
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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        D2CVN7_TETTH | D2CVN7: 5dfm 5dof
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(-) Related Entries Specified in the PDB File

5dof 5dok