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(-) Description

Title :  STRUCTURE OF M. TUBERCULOSIS CYSQ, A PAP PHOSPHATASE WITH AMP, PO4, AND 3MG BOUND
 
Authors :  A. J. Fisher, A. I. Erickson
Date :  02 Sep 15  (Deposition) - 11 Nov 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Cysq, Pap Phosphatase, Amp, Magnesium, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. I. Erickson, R. D. Sarsam, A. J. Fisher
Crystal Structures Of Mycobacterium Tuberculosis Cysq, With Substrate And Products Bound.
Biochemistry V. 54 6830 2015
PubMed-ID: 26512869  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01000

(-) Compounds

Molecule 1 - 3'-PHOSPHOADENOSINE 5'-PHOSPHATE PHOSPHATASE
    Chains: A
    EC Number: 3.1.3.7, 3.1.3.11, 3.1.3.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CYSQ, MT2189
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: CYSQ, PAP PHOSPHATASE, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, 5-BISPHOSPHONUCLEOSIDE 3'(2')-PHOSPHOHYDROLASE, D-FRUCTOSE-1,6- BISPHOSPHATE 1-PHOSPHOHYDROLASE, DPNPASE, FRUCTOSE-1,6- BISPHOSPHATASE, FBPASE, INOSITOL-1-MONOPHOSPHATASE,IMPASE, INOSITOL- 1-PHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:73 , ASP A:91 , LEU A:93 , MG A:302 , PO4 A:305 , HOH A:439binding site for residue MG A 301
2AC2SOFTWAREASP A:91 , ASP A:94 , ASP A:212 , MG A:301 , AMP A:304 , PO4 A:305 , HOH A:442binding site for residue MG A 302
3AC3SOFTWAREGLU A:73 , PO4 A:305 , HOH A:414 , HOH A:466 , HOH A:493 , HOH A:497binding site for residue MG A 303
4AC4SOFTWAREASP A:94 , SER A:162 , ARG A:165 , GLY A:185 , SER A:186 , ALA A:187 , LYS A:190 , HIS A:204 , GLY A:206 , GLY A:207 , GLN A:208 , ASP A:212 , MG A:302 , PO4 A:305 , HOH A:418 , HOH A:419 , HOH A:436 , HOH A:442 , HOH A:445 , HOH A:454 , HOH A:466 , HOH A:469 , HOH A:529binding site for residue AMP A 304
5AC5SOFTWAREGLU A:73 , ASP A:91 , LEU A:93 , ASP A:94 , GLY A:95 , THR A:96 , MG A:301 , MG A:302 , MG A:303 , AMP A:304 , HOH A:414 , HOH A:421 , HOH A:442 , HOH A:466 , HOH A:497binding site for residue PO4 A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DJH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:117 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DJH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DJH)

(-) Exons   (0, 0)

(no "Exon" information available for 5DJH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...eeee......hhhhhh.eeeeeeeeehhhhhh.......eeeeeeee...eeeeeeeee.....eeee..........eeeeee.....hhhhhhh....eeeeee.hhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eee..................eeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5djh A -16 HHHHHDDLTDAELAADLAADAGKLLLQVRAEIGFDQPWTLGEAGDRQANSLLLRRLQAERPGDAVLSEEAHDDLARLKSDRVWIIDPLDGTREFSTPGRDDWAVHIALWRRSPEITDAAVALPARGNVVYRTDTVTSVPGTLRIAVSATRPPAVLHRIRQTLAIQPVSIGSAGAKAMAVIDGYVDAYLHAGGQWEWDSAAPAGVMLAAGMHASRLDGSPLRYNQLDPYLPDLLMCRAEVAPILLGAIADAWR 267
                                ||  15        25        35        45        55        65        75        85        95       105       115 ||    129       139      |155       165       175       185       195       205       215       225       235       245       255       265  
                              -12|                                                                                                       117|                     146|                                                                                                                  
                                11                                                                                                        122                      153
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DJH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DJH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DJH)

(-) Gene Ontology  (22, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser A:117 - Pro A:122   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYSQ_MYCTO | P9WKJ0: 5djf 5djg 5dji 5djj 5djk
        CYSQ_MYCTU | P9WKJ1: 5djf 5djg 5dji 5djj 5djk

(-) Related Entries Specified in the PDB File

5djf 5djg 5dji 5djj 5djk