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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 IN COMPLEX WITH DEACYLATED PRODUCT OF CEFOPERAZONE

Authors :   J. Ren, J. E. Nettleship, A. Males, D. I. Stuart, R. J. Owens

Date :   26 Aug 15 (Deposition) - 13 Jan 16 (Release) - 10 Feb 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A

Keywords :   Cefoperazone, Beta-Lactam Antibiotics, Acyl-Enzyme Complex, De- Acylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Ren, J. E. Nettleship, A. Males, D. I. Stuart, R. J. Owens
Crystal Structures Of Penicillin-Binding Protein 3 In Complexes With Azlocillin And Cefoperazone In Both Acylated And Deacylated Forms.
Febs Lett. V. 590 288 2016
PubMed-ID: 26823174 | Reference-DOI: 10.1002/1873-3468.12054

Molecule 1 - CELL DIVISION PROTEIN
	Chains	:	A
	EC Number	:	2.4.1.129
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	UNP RESIDUES 35-579
	Gene	:	PBPB, FTSI_2, ERS445055_04698, PAE221_03076, YQ19_27590
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	PENICILLIN-BINDING PROTEIN 3,PSEUDOMONAS AERUGINOSA GENOME ASSEMBLY PAE221

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	59J	1	Ligand/Ion	(2R,5R)-2-[(R)-CARBOXY{[(2R)-2-{[(4-ETHYL-2,3-DIOXOPIPERAZIN-1-YL)CARBONYL]AMINO}-2-(4-HYDROXYPHENYL)ACETYL]AMINO}METHYL]-5-METHYL-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2	GOL	1	Ligand/Ion	GLYCEROL
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:387 , VAL A:388 , GLY A:389	binding site for residue SO4 A 601
2	AC2	SOFTWARE	LYS A:490 , LYS A:529	binding site for residue SO4 A 602
3	AC3	SOFTWARE	ASN A:275 , SER A:294 , VAL A:333 , SER A:349 , ASN A:351 , THR A:404 , TYR A:407 , TYR A:409 , SER A:485 , GLY A:486 , THR A:487 , ARG A:489 , TYR A:498 , TYR A:503 , TYR A:532 , PHE A:533 , GLY A:534 , GLY A:535	binding site for residue 59J A 603
4	AC4	SOFTWARE	GLY A:247 , SER A:248 , ARG A:284 , PHE A:290 , ASP A:525	binding site for residue GOL A 604

(no "SS Bond" information available for 5DF9)

Asymmetric/Biological Unit

No.	Residues
1	Gln A:265	-	Pro A:266
2	Tyr A:319	-	Pro A:320
3	Ala A:511	-	Pro A:512
4	Leu A:560	-	Pro A:561

(no "SAP(SNP)/Variant" information available for 5DF9)

(no "PROSITE Motif" information available for 5DF9)

(no "Exon" information available for 5DF9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:509
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......ee.....eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....eeeeeeehhhhhhhhhh.....eeeeeeeeee..hhhhhhhhhh.........hhhhhhhhhhhhee.eeeee.............eee..ee...ee...hhhhhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee............hhhhhhhhhhh...hhhhhhhhhhhhhhhh.......eee....eeee..eeee.......eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhh......hhhhhhhhhhhhhh..ee..............ee..hhhhhhhhhhhhhhhhhh...hhhhh......eeeeeeeeee......eeeeeeeeeeeeee......eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5df9 A  53 VRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLP 561
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DF9)

(no "CATH Domain" information available for 5DF9)

(no "Pfam Domain" information available for 5DF9)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:511 - Pro A:512	[ RasMol ]
		Gln A:265 - Pro A:266	[ RasMol ]
		Leu A:560 - Pro A:561	[ RasMol ]
		Tyr A:319 - Pro A:320	[ RasMol ]

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	Q51504_PSEAI \| Q51504	:	3oc2 3ocl 3ocn 3pbn 3pbo 3pbq 3pbs 4fsf 4l0l 5df7 5df8

5df8	CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CEFOPERAZONE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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