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(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PBP3 COMPLEXED WITH COMPOUND 14
 
Authors :  S. Han
Date :  27 Jun 12  (Deposition) - 17 Oct 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Penicillin Binding Protein, Penicillin-Binding Protein-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. J. Mitton-Fry, J. T. Arcari, M. F. Brown, J. M. Casavant, S. M. Finegan, M. E. Flanagan, H. Gao, D. M. George, B. S. Gerstenberger S. Han, J. R. Hardink, T. M. Harris, T. Hoang, M. D. Huband, R. Irvine, M. S. Lall, M. Megan Lemmon, C. Li, J. Lin, S. P. Mccurdy, J. P. Mueller, L. Mullins, M. Niosi, M. C. Noe, D. Pattavina, J. Penzien, M. S. Plummer H. Risley, B. P. Schuff, V. Shanmugasundaram, J. T. Starr, J. Sun, J. Winton, J. A. Young
Novel Monobactams Utilizing A Siderophore Uptake Mechanism For The Treatment Of Gram-Negative Infections.
Bioorg. Med. Chem. Lett. V. 22 5989 2012
PubMed-ID: 22892121  |  Reference-DOI: 10.1016/J.BMCL.2012.07.005

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 3
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 50-579
    GeneFTSI
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid287

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10W01Ligand/Ion(4R,5S,8Z)-8-(2-AMINO-1,3-THIAZOL-4-YL)-1-[3-(1,5-DIHYDROXY-4-OXO-1,4-DIHYDROPYRIDIN-2-YL)-1,2-OXAZOL-5-YL]-5-FORMYL-11,11-DIMETHYL-1,7-DIOXO-4-(SULFOAMINO)-10-OXA-2,6,9-TRIAZADODEC-8-EN-12-OIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:291 , SER A:294 , VAL A:333 , SER A:334 , LYS A:348 , SER A:349 , ASN A:351 , TYR A:409 , LYS A:484 , SER A:485 , GLY A:486 , THR A:487 , ALA A:488 , ARG A:489 , TYR A:503 , PHE A:533 , HOH A:791 , HOH A:813 , HOH A:815 , HOH A:889BINDING SITE FOR RESIDUE 0W0 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FSF)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gln A:265 -Pro A:266
2Tyr A:319 -Pro A:320
3Ala A:511 -Pro A:512

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FSF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FSF)

(-) Exons   (0, 0)

(no "Exon" information available for 4FSF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:501
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4fsfa1 A:53-221 automated matches                                                                                                                                       d4fsfa2 A:222-563 automated matches                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......ee.....eeeeeeeeeeeeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeeehhhhhhhhhh.....eeeeeeeeee..hhhhhhhhhh.........hhhhhhhhhhhhh..eee.........................ee...hhhhhhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeee.................hhhhhh...hhhhhhhhhhhhhhhhh......eee....eeee..eeee.......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhh.....hhhhhhhhhhhhhh..ee..............ee..hhhhhhhhhhhhhhhhhh...hhhhh......eeeeeeee...eeeeeeeee......eeeeeeee.......hhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fsf A  53 VRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKNAYRSLFAGFAPATDPRIAMVVVIDEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTA 563
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       502       512       522       532       542       552       562 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               490|                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                501                                                              

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FSF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FSF)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q51504_PSEAI | Q515043pbr 3pbt
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        Q51504_PSEAI | Q515043oc2 3ocl 3ocn 3pbn 3pbo 3pbq 3pbs 4l0l 5df7 5df8 5df9

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4FSF)