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(-) Description

Title :  X-RAY STRUCTURE OF HUMAN RBPMS IN COMPLEX WITH THE RNA
 
Authors :  M. Teplova, T. A. Farazi, T. Tuschl, D. J. Patel
Date :  25 Aug 15  (Deposition) - 23 Sep 15  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B,P,Q
Keywords :  Rrm Domain, Rna Binding Protein, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Teplova, T. A. Farazi, T. Tuschl, D. J. Patel
Structural Basis Underlying Cac Rna Recognition By The Rrm Domain Of Dimeric Rna-Binding Protein Rbpms.
Q. Rev. Biophys. V. 49 E1 2016
PubMed-ID: 26347403  |  Reference-DOI: 10.1017/S0033583515000207

(-) Compounds

Molecule 1 - RNA-BINDING PROTEIN WITH MULTIPLE SPLICING
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 14-111
    Gene: RBPMS, HERMES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RBP-MS,HEART AND RRM EXPRESSED SEQUENCE,HERMES
 
Molecule 2 - RNA (5'-R(P*UP*CP*AP*CP*U)-3')
    Chains: Q
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 3 - RNA (5'-R(*UP*CP*AP*C)-3')
    Chains: P
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:59 , LYS A:60 , ARG A:71 , HOH A:339binding site for residue SO4 A 201
2AC2SOFTWARELYS A:60 , LYS A:78 , PHE A:98 , HOH A:316binding site for residue SO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DET)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DET)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DET)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee......hhhhhhhhhh....eeeeeee......eeeeee.hhhhhhhhhhhhh............eeee.......hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5det A  21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLV 111
                                    30        40        50        60        70        80        90       100       110 


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee......hhhhhhhhhh....eeeeeee......eeeeee.hhhhhhhhhhhhh............eeee.......hhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 5det B  17 NLEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLV 111
                             ||     27        37        47        57        67        77        87        97       107    
                            18|                                                                                           
                             20                                                                                           


Chain P from PDB  Type:RNA  Length:4
                                    
                 5det P   1 UCAC   4


Chain Q from PDB  Type:RNA  Length:5
                                     
                 5det Q   1 UCACU   5
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DET)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DET)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  RBPMS_HUMAN | Q93062
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBPMS_HUMAN | Q93062: 1bny 5cyj

(-) Related Entries Specified in the PDB File

5cyj 5CYJ CONTAINS THE SAME PROTEIN IN THE FREE STATE