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(-) Description

Title :  X-RAY STRUCTURE OF HUMAN RBPMS
 
Authors :  M. Teplova, T. A. Farazi, D. J. Patel
Date :  30 Jul 15  (Deposition) - 30 Sep 15  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rrm Domain, Rna-Binding Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Teplova, T. A. Farazi, T. Tuschl, D. J. Patel
Structural Basis Underlying Cac Rna Recognition By The Rrm Domain Of Dimeric Rna-Binding Protein Rbpms.
Q. Rev. Biophys. V. 49 E1 2016
PubMed-ID: 26347403  |  Reference-DOI: 10.1017/S0033583515000207

(-) Compounds

Molecule 1 - RNA-BINDING PROTEIN WITH MULTIPLE SPLICING
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RRM DOMAIN (UNP RESIDUES 14-110)
    Gene: RBPMS, HERMES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RBP-MS,HEART AND RRM EXPRESSED SEQUENCE,HERMES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5CYJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CYJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CYJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CYJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CYJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee......hhhhhhhhhh....eeeeeee......eeeeee.hhhhhhhhhhhhh............eeee.......hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5cyj A  21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNAmNGIRFDPEIPQTLRLEFAKANTKmAKNKLV 111
                                    30        40        50        60        70        80|       90       100    |  110 
                                                                                       81-MSE                 105-MSE  


Chain B from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee......hhhhhhhhhh....eeeeeee......eeeeee.hhhhhhhhhhhhh............eeee.......hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5cyj B  21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNAmNGIRFDPEIPQTLRLEFAKANTKmAKNKLV 111
                                    30        40        50        60        70        80|       90       100    |  110 
                                                                                       81-MSE                 105-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYJ)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  RBPMS_HUMAN | Q93062
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBPMS_HUMAN | Q93062: 1bny 5det

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CYJ)