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(-) Description

Title :  PEPT - CIM
 
Authors :  P. Ma, M. Caffrey
Date :  12 Aug 15  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Helical, Major Facilitator Superfamily (Mfs) Transporters, Peptst Oligopeptide-Proton Symporter (Pot Family), Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Ma, M. Caffrey
Pept - Cim
To Be Published
PubMed: search

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Gene: DTPT, STU0970
    Organism Scientific: STREPTOCOCCUS THERMOPHILUS (STRAIN ATCC BAA-250 / LMG 18311)
    Organism Taxid: 264199
    Strain: ATCC BAA-250 / LMG 18311

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
197M8Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-ENOATE
297N2Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-ENOATE
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:48 , GLY A:107 , ALA A:108 , SER A:109 , LYS A:473binding site for residue PO4 A 501
02AC2SOFTWARETYR A:335 , SER A:385 , LEU A:387 , TRP A:388 , GLY A:391binding site for residue 97M A 502
03AC3SOFTWAREARG A:85 , PRO A:86 , PHE A:89 , PHE A:187 , TYR A:193 , TYR A:194 , GLY A:197binding site for residue 97M A 503
04AC4SOFTWARELEU A:226 , ALA A:233 , VAL A:236binding site for residue 97N A 504
05AC5SOFTWAREILE A:232 , LEU A:369 , VAL A:451 , SER A:455 , 97N A:508 , 97M A:510binding site for residue 97M A 505
06AC6SOFTWAREMET A:238 , TRP A:243 , ALA A:248 , ILE A:255 , ALA A:259binding site for residue 97M A 506
07AC7SOFTWAREILE A:82 , 97N A:508binding site for residue 97M A 507
08AC8SOFTWAREPRO A:214 , LEU A:221 , ALA A:376 , 97M A:505 , 97M A:507binding site for residue 97N A 508
09AC9SOFTWAREPHE A:106 , SER A:109 , LEU A:117 , VAL A:469 , PHE A:470 , LYS A:473binding site for residue 97M A 509
10AD1SOFTWARETYR A:456 , LEU A:459 , 97M A:505binding site for residue 97M A 510
11AD2SOFTWAREALA A:173 , SER A:180 , ILE A:184 , PHE A:187 , HOH A:612binding site for residue 97M A 511

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D6K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D6K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D6K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D6K)

(-) Exons   (0, 0)

(no "Exon" information available for 5D6K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d6k A   6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTANQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265    || 283       293       303       313       323       333       343 ||    356       366       376       386       396       420       430       440       450       460       470        
                                                                                                                                                                                                                                                                                                  270|                                                               345|                                                     405|                                                          
                                                                                                                                                                                                                                                                                                   279                                                                349                                                      420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D6K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D6K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D6K)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q5M4H8_STRT2 | Q5M4H8: 4aps 4d2b 4d2c 4d2d 4xni 4xnj 5d58 5d59 5mmt

(-) Related Entries Specified in the PDB File

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