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(-) Description

Title :  X-RAY STRUCTURE OF PEPTST2
 
Authors :  C. Y. Huang, V. Olieric, K. Diederichs, M. Wang, M. Caffrey
Date :  15 Jan 15  (Deposition) - 03 Jun 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Peptide Transporter, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Y. Huang, V. Olieric, P. Ma, E. Panepucci, K. Diederichs, M. Wang, M. Caffrey
In Meso In Situ Serial X-Ray Crystallography Of Soluble And Membrane Proteins.
Acta Crystallogr. , Sect. D V. 71 1238 2015
PubMed-ID: 26057665  |  Reference-DOI: 10.1107/S1399004715005210

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DTPT, STU0970
    Organism Scientific: STREPTOCOCCUS THERMOPHILUS LMG 18311
    Organism Taxid: 264199

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
178M13Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:245 , ALA A:248 , PHE A:263binding site for residue 78M A 501
02AC2SOFTWARELEU A:212 , PRO A:214 , LEU A:221 , ALA A:376 , 78M A:503 , 78M A:504 , 78M A:510binding site for residue 78M A 502
03AC3SOFTWARELEU A:369 , ALA A:376 , VAL A:451 , SER A:455 , 78M A:502 , 78M A:510 , 78M A:511binding site for residue 78M A 503
04AC4SOFTWAREILE A:73 , PHE A:76 , ILE A:81 , LEU A:212 , VAL A:217 , 78M A:502binding site for residue 78M A 504
05AC5SOFTWAREALA A:173 , PHE A:187 , PHE A:195binding site for residue 78M A 505
06AC6SOFTWARELEU A:387 , TRP A:388 , 78M A:511binding site for residue 78M A 506
07AC7SOFTWAREALA A:452 , TYR A:456 , PHE A:457binding site for residue 78M A 507
08AC8SOFTWAREPHE A:106 , GLY A:113 , ILE A:116 , LEU A:117 , VAL A:469 , 78M A:510binding site for residue 78M A 508
09AC9SOFTWARETRP A:318 , PHE A:319 , TRP A:323 , PRO A:386binding site for residue 78M A 509
10AD1SOFTWARE78M A:502 , 78M A:503 , 78M A:508binding site for residue 78M A 510
11AD2SOFTWARELYS A:218 , LEU A:221 , SER A:225 , ILE A:232 , TYR A:378 , TRP A:388 , 78M A:503 , 78M A:506binding site for residue 78M A 511
12AD3SOFTWAREARG A:85 , PRO A:86 , PHE A:89 , TYR A:194 , HOH A:634binding site for residue 78M A 512
13AD4SOFTWAREMET A:66 , ILE A:73 , LEU A:111 , ILE A:119 , LEU A:246 , LEU A:253binding site for residue 78M A 513
14AD5SOFTWAREASP A:48 , GLY A:107 , ALA A:108 , SER A:109 , LYS A:473binding site for residue PO4 A 514

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XNJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XNJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XNJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xnj A   5 GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264      |277       287       297       307       317       327       337       347       357       367       377       387       397       407      |422       432       442       452       462       472      
                                                                                                                                                                                                                                                                                                    271|                                                                                                                                        414|                                                          
                                                                                                                                                                                                                                                                                                     275                                                                                                                                         420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XNJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XNJ)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4xnj
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  Q5M4H8_STRT2 | Q5M4H8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5M4H8_STRT2 | Q5M4H8: 4aps 4d2b 4d2c 4d2d 4xni 5d58 5d59 5d6k 5mmt

(-) Related Entries Specified in the PDB File

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