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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOFORM 2 OF URIDINE PHOSPHORYLASE FROM SCHISTOSOMA MANSONI IN COMPLEX WITH CITRATE
 
Authors :  L. Romanello, J. R. Torini, R. Demarco, H. M. Pereira
Date :  30 Jul 15  (Deposition) - 16 Mar 16  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Da Silva Neto, J. R. Torini De Souza, L. Romanello, A. Cassago V. H. Serrao, R. Demarco, J. Brandao-Neto, R. C. Garratt, H. D. Pereira
Analysis Of Two Schistosoma Mansoni Uridine Phosphorylases Isoforms Suggests The Emergence Of A Protein With A Non-Canonical Function.
Biochimie V. 125 12 2016
PubMed-ID: 26898674  |  Reference-DOI: 10.1016/J.BIOCHI.2016.02.007

(-) Compounds

Molecule 1 - PUTATIVE URIDINE PHOSPHORYLASE
    Chains: A, B, C
    EC Number: 2.4.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SMP_082420
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:45 , GLY A:46 , SER A:47 , ARG A:50 , HIS A:91 , ARG A:121 , THR A:124 , GLU A:234 , GLU A:276 , ARG B:77binding site for residue FLC A 301
2AC2SOFTWAREGLY C:46 , ARG C:50 , ARG C:77 , HIS C:91 , GLY C:92 , ILE C:93 , ARG C:121 , GLY C:123 , THR C:124 , GLU C:234binding site for residue FLC C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro C:67 -Val C:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CYF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CYF)

(-) Exons   (0, 0)

(no "Exon" information available for 5CYF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...ee....ee....hhhhhhh...eeeee.hhhhhhhhhhhhhhhhh................eeee..eeeee...hhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......eeeeeeee......eeeeee..eeeeee...hhhhhhhhhhhhhhh.....eeeeeeee....hhhhh.........hhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyf A   7 IVNSHLSELDEDVFHHFGFTTKSFDFKEKFGDVKFVCVCGSSGRIHNFAISMAKLAGLALPVENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRLGTSDGLGVKPGTIVLSDRCVNTKLEPYNELCILGKPVRRQTKVDSNAVNELKKLSENLSLKCSVVVGGTITANDFYEELGRLNGSICTFSKEEKLAFLQSVYDHGIRNMEMEGAAITSHCNLTGHRAILVCVTVVNRLETDEVTTSTDEFKLFEQLPGQLVGEYLKRNNGIIVR 296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296


Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh...............hhhhhhh...eeeee.hhhhhhhhhhhhhhhhh................eeee..eeeee...hhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......eeeeeeee......eeeeee..eeeeee...hhhhhhhhhhhhhhh.....eeeeeeee....hhhhh.........hhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cyf B   7 IVNSHLSELDEDVFHHFGFTTKSFDFKEKFGDVKFVCVCGSSGRIHNFAISMAKLAGLALPVENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRLGTSDGLGVKPGTIVLSDRCVNTKLEPYNELCILGKPVRRQTKVDSNAVNELKKLSENLSLKCSVVVGGTITANDFYEELGRLNGSICTFSKEEKLAFLQSVYDHGIRNMEMEGAAITSHCNLTGHRAILVCVTVVNRLETDEVSTDEFKLFEQLPGQLVGEYLKRNNGIIVR 296
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       268       278       288        
                                                                                                                                                                                                                                                                                            265|                            
                                                                                                                                                                                                                                                                                             268                            


Chain C from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhh...eeeee.hhhhhhhhhhhhhhhhh................eeee..eeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee.......eeeeeeee......eeeeee..eeeeee...hhhhhhhhhhhhh.......eeeeeeee....hhhhh.........hhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyf C   9 NSHDVFHHFGFTTKSFDFKEKFGDVKFVCVCGSSGRIHNFAISMAKLAGLALPVENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRLGTSDGLGVKPGTIVLSDRCVNTKLEPYNELCILGKPVRRQTKVDSNAVNELKKLSENLSLKCSVVVGGTITANDFYEELGRLNGSICTFSKEEKLAFLQSVYDHGIRNMEMEGAAITSHCNLTGHRAILVCVTVVNRLETDTSTDEFKLFEQLPGQLVGEYLKRNNGIIVR 296
                              ||    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       267       277       287         
                             11|                                                                                                                                                                                                                                                  263|                             
                              18                                                                                                                                                                                                                                                   267
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYF)

(-) Gene Ontology  (7, 7)

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 Related Entries

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        G4VGH9_SCHMA | G4VGH9: 5cyg

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5cyg