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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOFORM 2 OF URIDINE PHOSPHORYLASE FROM SCHISTOSOMA MANSONI APO FORM
 
Authors :  L. Romanello, J. R. Torini, R. Demarco, H. M. Pereira
Date :  30 Jul 15  (Deposition) - 16 Mar 16  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Da Silva Neto, J. R. Torini De Souza, L. Romanello, A. Cassago V. H. Serrao, R. Demarco, J. Brandao-Neto, R. C. Garratt, H. D. Pereira
Analysis Of Two Schistosoma Mansoni Uridine Phosphorylases Isoforms Suggests The Emergence Of A Protein With A Non-Canonical Function.
Biochimie V. 125 12 2016
PubMed-ID: 26898674  |  Reference-DOI: 10.1016/J.BIOCHI.2016.02.007

(-) Compounds

Molecule 1 - PUTATIVE URIDINE PHOSPHORYLASE
    Chains: A, B
    EC Number: 2.4.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SMP_082420
    Organism Common: BLOOD FLUKE
    Organism Scientific: SCHISTOSOMA MANSONI
    Organism Taxid: 6183

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CYG)

(-) Sites  (0, 0)

(no "Site" information available for 5CYG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CYG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:66 -Pro A:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CYG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CYG)

(-) Exons   (0, 0)

(no "Exon" information available for 5CYG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh...............hhhhhhh...eeeee.hhhhhhhhhhhhhhhh.................eeee..eeeee...hhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.......eeeeeeee......eeeeee..eeeeee...hhhhhhhhhhhhhh..eeeeeeee..................hhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyg A   5 QPIVNSHLSELDEDVFHHFGFTTKSFDFKEKFGDVKFVCVCGSSGRIHNFAISMAKLAGLALPVENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRLGTSDGLGVKPGTIVLSDRCVNTKLEPYNELCILGKPVRRQTKVDSNAVNELKKLSENLSVVVGGTITANDFYEELGRLNGSICTFSKEEKLAFLQSVYDHGIRNMEMEGAAITSHCYLTGHRAILVCVTVVNRLETDESTDEFKLFEQLPGQLVGEYLKRNNGIIVR 296
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174     ||188       198       208       218       228       238       248       258     ||271       281       291     
                                                                                                                                                                                                         180|                                                                            264|                            
                                                                                                                                                                                                          185                                                                             268                            


Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...............hhhhhhh...eeeee.hhhhhhhhhhhhhhhhh................eeee..eeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee.......eeeeeeee......eeeeee..eeeeee...hhhhhhhhhhhhhhh.eeeeeeee....hhhhh.........hhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee........hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cyg B   7 IVNSHLSELDEDVFHHFGFTTKSFDFKEKFGDVKFVCVCGSSGRIHNFAISMAKLAGLALPVENIAGSHARFVLYKVDHILFADHGIGIPSTLILMHEVTKLLYYAGCKDVLFIRLGTSDGLGVKPGTIVLSDRCVNTKLEPYNELCILGKPVRRQTKVDSNAVNELKKLSENLSVVVGGTITANDFYEELGRLNGSICTFSKEEKLAFLQSVYDHGIRNMEMEGAAITSHCYLTGHRAILVCVTVVNRLETDEVDEFKLFEQLPGQLVGEYLKRNNGII 294
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176   ||  190       200       210       220       230       240       250       260    || 274       284       294
                                                                                                                                                                                                       180|                                                                             265|                        
                                                                                                                                                                                                        185                                                                              270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CYG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CYG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CYG)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:66 - Pro A:67   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G4VGH9_SCHMA | G4VGH9: 5cyf

(-) Related Entries Specified in the PDB File

5cyf URIDINE PHOSPHORYLASE ISOFORM 2 IN COMPLEX WITH CITRATE