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(-) Description

Title :  CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI VACUOLAR SOLUBLE PYROPHOSPHATASES IN COMPLEX WITH BISPHOSPHONATE INHIBITOR BPH-1260
 
Authors :  W. D. Liu, Y. Y. Yang, T. P. Ko, Y. Y. Zheng, C. C. Chen, R. T. Guo
Date :  25 Jul 15  (Deposition) - 02 Mar 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.96
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Substrate Binding, Acidocalcisomal Pyrophosphatase, Inhibitor, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Y. Yang, T. P. Ko, Y. Y. Zheng, W. D. Liu, C. C. Chen, R. T. Guo
Crystal Structure Of Trypanosoma Cruzi Protein In Complex With Ligand
Acs Chem. Biol. 2016
PubMed: search

(-) Compounds

Molecule 1 - ACIDOCALCISOMAL PYROPHOSPHATASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET46
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-410
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 5693

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
14GA2Ligand/Ion1-BUTYL-3-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)-1H-IMIDAZOL-3-IUM
2MG2Ligand/IonMAGNESIUM ION
3MLT3Ligand/IonD-MALATE
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
14GA4Ligand/Ion1-BUTYL-3-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)-1H-IMIDAZOL-3-IUM
2MG-1Ligand/IonMAGNESIUM ION
3MLT6Ligand/IonD-MALATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:213 , LYS A:215 , MET A:221 , ASN A:222 , ARG A:223 , HIS A:336binding site for residue MLT A 901
2AC2SOFTWARELYS A:215 , ARG A:223 , HIS A:336 , ASN A:337 , HOH A:1002 , ARG B:223binding site for residue MLT A 902
3AC3SOFTWARELYS A:237 , TYR A:261 , ASP A:323 , TYR A:368 , LYS A:369 , MG A:904binding site for residue DRG A 903
4AC4SOFTWAREASP A:324binding site for residue MG A 904
5AC5SOFTWAREARG B:213 , LYS B:215 , LEU B:219 , MET B:221 , ASN B:222 , ARG B:223 , HIS B:336binding site for residue MLT B 901
6AC6SOFTWARELYS B:237 , TYR B:261 , ASP B:323 , TYR B:368 , LYS B:369 , MG B:903binding site for residue DRG B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CUU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CUU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CUU)

(-) Exons   (0, 0)

(no "Exon" information available for 5CUU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhh......ee.hhhhhhhhhh....hhhhhhhhhhhhh....eehhhhhhhhhh......hhhhh..............eeeeeeee........eeeeeeee.....eeeehhhhhh.......ee..........eeeeeee.......eee........eee.ee..ee..........eeee..........ee...eee.....eeee..........eeeeeeeeeeeeee..eeeeeeeeee....hhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhh....ee.hhhh.eehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cuu A  33 NSYIGTGLDTSLENVKPLPEACKRNVTEFDLVAYGKDEFTLSMEKRVMARMFSAFDVTQLGYLEERKIEHMCKYLGRVMNEDDVKQMKSEINAIDGHITFEKFWAWWCSHPEVPAKKDFFSMVSVDFAVPYHQQQLLTRETGELYTPSYRVLYYFRDMETGKELQVSPWHDIPLYVRDLVRTKPASLPMNRYNFICEIPKWTRAKFEIATGEPFNPIKQDIKNGVPRFYKHGDMMWNYGALPQTWESTDVVFEGGYVGDNDPIDAIEIGMTQFKVGQVGAVKVLGILGMIDDGQMDWKVICISHNDPICRFLKDIHDVPKFLPGCLDAIHEWFRVYKICQGGVENKFVFNGEFKDKSFAMKVIDESHYMWGNLRKINK 410
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402        


Chain B from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhh........ee.hhhhhhhhhh....hhhhhhhhhhhh.....eehhhhhhhhhh.........................eeeeeeee........eeeeeeee.....eeee.............ee..........eeeeeee.......eee........eee.ee..ee..........eeee..........ee...eee.....eeee..........eeeeeeeeeeeeee..eeeeeeeeee....hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhh....ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cuu B  32 ANSYIGTGLDTSLENVKPLPEACKRNVTEFDLVAYGKDEFTLSMEKRVMARMFSAFDVTQLGYLEERKIEHMCKYLGRVMNEDDVKQMKSEINAIDGHITFEKFWAWWCSHPEVPAKKDFFSMVSVDFAVPYHQQQLLTRETGELYTPSYRVLYYFRDMETGKELQVSPWHDIPLYVRDLVRTKPASLPMNRYNFICEIPKWTRAKFEIATGEPFNPIKQDIKNGVPRFYKHGDMMWNYGALPQTWESTDVVFEGGYVGDNDPIDAIEIGMTQFKVGQVGAVKVLGILGMIDDGQMDWKVICISHNDPICRFLKDIHDVPKFLPGCLDAIHEWFRVYKICQGGVENKFVFNGEFKDKSFAMKVIDESHYMWGNLRKINK 410
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CUU)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4JH30_TRYCR | Q4JH30: 5cuv 5cux

(-) Related Entries Specified in the PDB File

5cuv 5cux 5cuy