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(-) Description

Title :  RESTRAINED LEAST SQUARES REFINEMENT OF NATIVE (CALCIUM) AND CADMIUM-SUBSTITUTED CARP PARVALBUMIN USING X-RAY CRYSTALLOGRAPHIC DATA AT 1.6-ANGSTROMS RESOLUTION
 
Authors :  A. L. Swain, R. H. Kretsinger, E. L. Amma
Date :  24 Jan 90  (Deposition) - 15 Oct 90  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Calcium Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. L. Swain, R. H. Kretsinger, E. L. Amma
Restrained Least Squares Refinement Of Native (Calcium) And Cadmium-Substituted Carp Parvalbumin Using X-Ray Crystallographic Data At 1. 6-A Resolution.
J. Biol. Chem. V. 264 16620 1989
PubMed-ID: 2777802
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALCIUM-BINDING PARVALBUMIN B
    Chains: A
    Engineered: YES
    Organism Common: COMMON CARP
    Organism Scientific: CYPRINUS CARPIO
    Organism Taxid: 7962

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CA2Ligand/IonCALCIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:90 , ASP A:92 , ASP A:94 , LYS A:96 , GLU A:101 , HOH A:132BINDING SITE FOR RESIDUE CA A 109
2AC2SOFTWAREASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62BINDING SITE FOR RESIDUE CA A 110
3CDUNKNOWNASP A:51 , GLN A:52 , ASP A:53 , LYS A:54 , SER A:55 , GLY A:56 , PHE A:57 , ILE A:58 , GLU A:59 , GLU A:60 , ASP A:61 , GLU A:62NULL
4EFUNKNOWNASP A:90 , SER A:91 , ASP A:92 , GLY A:93 , ASP A:94 , GLY A:95 , LYS A:96 , ILE A:97 , GLY A:98 , VAL A:99 , ASP A:100 , GLU A:101NULL

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CPV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CPV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CPV)

(-) Exons   (0, 0)

(no "Exon" information available for 5CPV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains d5cpva_ A: Parvalbumin                                                                                        SCOP domains
               CATH domains -5cpvA00 A:1-108 EF-hand                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh........hhhhhhhh......hhhhhhhhhhh......eeehhhhhhhhhhh........hhhhhhhhhhh.....eee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5cpv A   0 xAFAGVLNDADIAAALEACKAADSFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDEFTALVKA 108
                            |        9        19        29        39        49        59        69        79        89        99         
                            |                                                                                                            
                            0-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CPV)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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        PRVB_CYPCA | P02618: 1b8c 1b8l 1b8r 1b9a 1cdp 4cpv

(-) Related Entries Specified in the PDB File

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