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(-) Description

Title :  DISPROPORTIONATING ENZYME 1 FROM ARABIDOPSIS - MALTOTRIOSE SOAK
 
Authors :  E. C. O'Neill, C. E. M. Stevenson, K. Tantanarat, D. Latousakis, M. I. Do M. Rejzek, T. Limpaseni, A. M. Smith, R. A. Field, D. M. Lawson
Date :  21 Jul 15  (Deposition) - 04 Nov 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Disproportionating Enzyme 1, 4-Alpha-Glucanotransferase, Glycoside Hydrolase Family 77, Starch Degradation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. C. O'Neill, C. E. Stevenson, K. Tantanarat, D. Latousakis, M. I. Donaldson, M. Rejzek, S. A. Nepogodiev, T. Limpaseni, R. A. Field D. M. Lawson
Structural Dissection Of The Maltodextrin Disproportionatio Cycle Of The Arabidopsis Plastidial Disproportionating Enzyme 1 (Dpe1).
J. Biol. Chem. V. 290 29834 2015
PubMed-ID: 26504082  |  Reference-DOI: 10.1074/JBC.M115.682245

(-) Compounds

Molecule 1 - 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC
    Chains: A, B
    EC Number: 2.4.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 44-756
    Gene: DPE1, AT5G64860, MXK3.9
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: THE CRYSTALLISED PROTEIN CONTAINED RESIDUES 46-576 OF THE WILD-TYPE AMINO ACID SEQUENCE PRECEDED BY AN N-TERMINAL NICKEL AFFINITY TAG
    Synonym: AMYLOMALTASE,DISPROPORTIONATING ENZYME,D-ENZYME,PROTEIN DISPROPORTIONATING ENZYME 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 33)

Asymmetric/Biological Unit (2, 33)
No.NameCountTypeFull Name
1EDO16Ligand/Ion1,2-ETHANEDIOL
2GLC17Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:261 , LEU A:264 , PHE A:265 , LYS A:268 , HOH A:856 , HOH A:1072binding site for residue EDO A 710
02AC2SOFTWAREALA A:141 , ASN A:142 , MET A:294 , ARG A:359 , HOH A:845binding site for residue EDO A 711
03AC3SOFTWAREPRO A:295 , ILE A:296 , TYR A:297 , TRP A:338 , GLC A:707 , HOH A:835binding site for residue EDO A 712
04AC4SOFTWAREHOH A:1140binding site for residue EDO A 713
05AC5SOFTWAREALA A:363 , GLN A:364 , TYR A:367 , ASP A:368 , ILE A:415 , LYS A:416binding site for residue EDO A 714
06AC6SOFTWAREASP A:220 , TYR A:223 , ARG A:246 , LEU A:251binding site for residue EDO A 715
07AC7SOFTWARELEU A:87 , HIS A:472 , GLN A:525 , MET A:536 , EDO A:717 , HOH A:817binding site for residue EDO A 716
08AC8SOFTWARETHR A:471 , HIS A:472 , ASN A:474 , THR A:476 , PRO A:523 , GLN A:525 , ARG A:535 , MET A:536 , EDO A:716 , HOH A:809binding site for residue EDO A 717
09AC9SOFTWAREPHE B:261 , LEU B:264 , PHE B:265 , LYS B:268 , HOH B:849binding site for residue EDO B 609
10AD1SOFTWAREPRO B:295 , ILE B:296 , TYR B:297 , GLC B:606 , HOH B:764binding site for residue EDO B 610
11AD2SOFTWAREALA B:141 , ASN B:142 , MET B:294 , ARG B:359 , TYR B:367 , HOH B:774 , HOH B:953binding site for residue EDO B 611
12AD3SOFTWAREALA B:363 , GLN B:364 , TYR B:367 , ASP B:368 , ILE B:415 , LYS B:416binding site for residue EDO B 612
13AD4SOFTWAREASP B:220 , ARG B:246 , HOH B:862binding site for residue EDO B 613
14AD5SOFTWARELEU B:87 , LEU B:88 , GLN B:525 , MET B:536 , EDO B:615 , HOH B:847binding site for residue EDO B 614
15AD6SOFTWARETHR B:471 , HIS B:472 , ASN B:474 , ASP B:475 , THR B:476 , PRO B:523 , GLN B:525 , ARG B:535 , MET B:536 , EDO B:614 , HOH B:703binding site for residue EDO B 615
16AD7SOFTWARESER B:533 , ARG B:535 , ASN B:537 , THR B:538 , GLY B:544 , ASN B:545binding site for residue EDO B 616
17AD8SOFTWAREASP A:130 , SER A:134 , TYR A:136 , ALA A:137 , VAL A:326 , ASP A:329 , PHE A:331 , GLN A:336 , TRP A:338 , ARG A:371 , ASP A:373 , HIS A:374 , GLU A:420 , LEU A:422 , GLY A:423 , ASP A:453 , ASN A:454 , PRO A:455 , HIS A:456 , HIS A:472 , ASP A:473 , ASN A:537 , PRO A:539 , ALA A:540 , EDO A:712 , HOH A:803 , HOH A:805 , HOH A:819 , HOH A:831 , HOH A:863 , HOH A:864 , HOH A:886 , HOH A:1015 , HOH A:1052 , LEU B:73binding site for Poly-Saccharide residues GLC A 701 through GLC A 709
18AD9SOFTWAREASP A:130 , SER A:134 , TYR A:136 , ALA A:137 , PRO A:242 , VAL A:326 , ASP A:329 , PHE A:331 , GLN A:336 , TRP A:338 , ARG A:371 , ASP A:373 , HIS A:374 , LYS A:397 , GLU A:420 , LEU A:422 , GLY A:423 , ASP A:453 , ASN A:454 , PRO A:455 , HIS A:456 , HIS A:472 , ASP A:473 , ASN A:537 , PRO A:539 , ALA A:540 , GLC A:701 , EDO A:712 , HOH A:803 , HOH A:805 , HOH A:819 , HOH A:831 , HOH A:863 , HOH A:864 , HOH A:885 , HOH A:886 , HOH A:1052 , HOH A:1140 , ASP B:64 , SER B:80 , TRP B:112 , ASP B:130 , SER B:134 , TYR B:136 , ALA B:137 , SER B:249 , ALA B:250 , LYS B:310 , PHE B:312 , VAL B:326 , GLN B:336 , TRP B:338 , ASP B:344 , ARG B:371 , ASP B:373 , HIS B:374 , GLU B:420 , LEU B:422 , GLY B:423 , GLN B:445 , PHE B:446 , ASP B:453 , ASN B:454 , HIS B:456 , SER B:469 , GLY B:470 , THR B:471 , HIS B:472 , ASP B:473 , ASN B:474 , ASP B:475 , ILE B:477 , ASP B:526 , ASN B:537 , PRO B:539 , ALA B:540 , GLU B:542 , PHE B:556 , EDO B:610 , EDO B:615 , HOH B:711 , HOH B:721 , HOH B:729 , HOH B:732 , HOH B:735 , HOH B:821 , HOH B:825 , HOH B:836 , HOH B:858 , HOH B:886 , HOH B:897 , HOH B:970 , HOH B:977 , HOH B:1002binding site for Poly-Saccharide residues GLC B 601 through GLC B 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CPS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CPS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CPS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CPS)

(-) Exons   (0, 0)

(no "Exon" information available for 5CPS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:517
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh....hhhhh.eeeee.hhhhh.........hhhhhhhhhhhhhhh..eee......................hhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhh.........eeeee.........eeeeee..hhhhhhh..hhhhhhhhhhhhhhh.eeeeehhhhh.eeeeee....hhhhheeee..hhhhhhhhhhhhh...eee......hhhhhhhhhhhh..eeee.hhh.........hhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeehhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cps A  60 SVGEDFPSEYEQWLPVPDPESRRRAGVLLHPTSFRGPHGIGDLGEEAFRFIDWLHSTGCSVWQVLPLVPPDEGGSPYAGQDANCGNTLLISLDELVKDGLLIKDELPQPIDADSVNYQTANKLKSPLITKAAKRLIDGNGELKSKLLDFRNDPSISCWLEDAAYFAAIDNTLNAYSWFEWPEPLKNRHLSALEAIYESQKEFIDLFIAKQFLFQRQWQKVREYARRQGVDIMGDMPIYVGYHSADVWANKKHFLLNKKGFPLLVSGVPPDLFSETGQLWGSPLYDWKAMESDQYSWWVNRIRRAQDLYDECRIDHFRGFAGFWAVPSEAKVAMVGRWKVGPGKSLFDAISKGVGKIKIIAEDLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLPHNHEVNQVVYSGTHDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSSTAQTAIIPMQDILGLGSSARMNTPATEVGNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       


Chain B from PDB  Type:PROTEIN  Length:512
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh....hhhhh.eeeee.hhhhh.........hhhhhhhhhhhhhhh..eee......................hhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhh.........eeeee....eeeeee..hhhhhhh..hhhhhhhhhhhhhhh.eeeeehhhhh.eeeeee.........eeee..hhhhhhhhhhhhh...eee......hhhhhhhhhhhh..eeee.hhh.........hhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeehhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cps B  60 SVGEDFPSEYEQWLPVPDPESRRRAGVLLHPTSFRGPHGIGDLGEEAFRFIDWLHSTGCSVWQVLPLVPPDEGGSPYAGQDANCGNTLLISLDELVKDGLLIKDELPQPIDADSVNYQTANKLKSPLITKAAKRLIDGNGELKSKLLDFRNDPSISCWLEDAAYFAAIDNTLNAYSWFEWPEPLKNRHLSALEAIYESQKEFIDLFIAKQFLFQRQWQKVREYARRQGVDIMGDMPIYVGYHSADVWANKKHFLLNKKGFPLLVSGVPPTGQLWGSPLYDWKAMESDQYSWWVNRIRRAQDLYDECRIDHFRGFAGFWAVPSEAKVAMVGRWKVGPGKSLFDAISKGVGKIKIIAEDLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLPHNHEVNQVVYSGTHDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSSTAQTAIIPMQDILGLGSSARMNTPATEVGNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574  
                                                                                                                                                                                                                                                                                                      328|                                                                                                                                                                                                                                                  
                                                                                                                                                                                                                                                                                                       334
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CPS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CPS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CPS)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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        DPE1_ARATH | Q9LV91: 5cpq 5cpt 5cq1 5csu 5csy

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