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(-) Description

Title :  DISPROPORTIONATING ENZYME 1 FROM ARABIDOPSIS - ACARBOSE SOAK
 
Authors :  E. C. O'Neill, C. E. M. Stevenson, K. Tantanarat, D. Latousakis, M. I. Do M. Rejzek, T. Limpaseni, A. M. Smith, R. A. Field, D. M. Lawson
Date :  23 Jul 15  (Deposition) - 04 Nov 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Disproportionating Enzyme 1, 4-Alpha-Glucanotransferase, Glycoside Hydrolase Family 77, Starch Degradation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. C. O'Neill, C. E. Stevenson, K. Tantanarat, D. Latousakis, M. I. Donaldson, M. Rejzek, S. A. Nepogodiev, T. Limpaseni, R. A. Field D. M. Lawson
Structural Dissection Of The Maltodextrin Disproportionatio Cycle Of The Arabidopsis Plastidial Disproportionating Enzyme 1 (Dpe1).
J. Biol. Chem. V. 290 29834 2015
PubMed-ID: 26504082  |  Reference-DOI: 10.1074/JBC.M115.682245

(-) Compounds

Molecule 1 - 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC
    Chains: A, B
    EC Number: 2.4.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 46-576
    Gene: DPE1, AT5G64860, MXK3.9
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Other Details: THE CRYSTALLISED PROTEIN CONTAINED RESIDUES 46-576 OF THE WILD-TYPE AMINO ACID SEQUENCE PRECEDED BY AN N-TERMINAL NICKEL AFFINITY TAG
    Synonym: AMYLOMALTASE,DISPROPORTIONATING ENZYME,D-ENZYME,PROTEIN DISPROPORTIONATING ENZYME 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 22)

Asymmetric/Biological Unit (4, 22)
No.NameCountTypeFull Name
1ACR1Ligand/IonALPHA-ACARBOSE
2BGC2Ligand/IonBETA-D-GLUCOSE
3EDO11Ligand/Ion1,2-ETHANEDIOL
4GLC8Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:261 , PHE A:265 , LYS A:268binding site for residue EDO A 608
02AC2SOFTWAREALA A:141 , ASN A:142 , MET A:294 , ARG A:359 , HOH A:702binding site for residue EDO A 609
03AC3SOFTWAREALA A:250 , ALA B:250binding site for residue EDO A 610
04AC4SOFTWAREALA A:363 , GLN A:364 , TYR A:367 , CYS A:370 , ILE A:415 , LYS A:416binding site for residue EDO A 611
05AC5SOFTWARELEU A:87 , HIS A:472 , GLN A:525 , MET A:536 , TRP A:548 , EDO A:613 , HOH A:706binding site for residue EDO A 612
06AC6SOFTWARETHR A:471 , HIS A:472 , ASN A:474 , THR A:476 , PRO A:523 , GLN A:525 , ARG A:535 , MET A:536 , EDO A:612 , HOH A:789binding site for residue EDO A 613
07AC7SOFTWAREPHE B:261 , PHE B:265 , LYS B:268binding site for residue EDO B 605
08AC8SOFTWAREALA B:363 , GLN B:364 , TYR B:367 , CYS B:370 , ILE B:415 , LYS B:416binding site for residue EDO B 606
09AC9SOFTWARELEU B:87 , HIS B:472 , GLN B:525 , MET B:536 , HOH B:702binding site for residue EDO B 607
10AD1SOFTWARETHR B:471 , HIS B:472 , ASN B:474 , THR B:476 , PRO B:523 , GLN B:525 , MET B:536 , HOH B:810binding site for residue EDO B 608
11AD2SOFTWAREARG B:535 , THR B:538 , GLY B:544 , ASN B:545binding site for residue EDO B 609
12AD3SOFTWAREASP A:329 , LEU A:330 , PHE A:331 , GLN A:336 , ASP A:373 , HIS A:374 , GLU A:420 , LEU A:422 , GLY A:423 , PHE A:446 , HIS A:456 , ASP A:473 , BGC A:604 , HOH A:701 , HOH A:704 , HOH A:711binding site for Poly-Saccharide residues BGC A 601 through GLC A 603
13AD4SOFTWAREASP A:130 , SER A:134 , TYR A:136 , ALA A:137 , MET A:294 , PRO A:295 , ILE A:296 , ASP A:329 , LEU A:330 , PHE A:331 , GLN A:336 , LEU A:337 , TRP A:338 , ARG A:371 , ILE A:372 , HIS A:374 , PHE A:375 , GLU A:420 , LEU A:422 , PHE A:446 , HIS A:472 , ASP A:473 , ASN A:537 , PRO A:539 , ALA A:540 , BGC A:601 , HOH A:701 , HOH A:711 , HOH A:713 , HOH A:734binding site for Poly-Saccharide residues ASP A 373 through GLC A 607
14AD5SOFTWAREASP A:130 , SER A:134 , TYR A:136 , ALA A:137 , ASP A:329 , LEU A:330 , PHE A:331 , GLN A:336 , LEU A:337 , TRP A:338 , ARG A:371 , ASP A:373 , HIS A:374 , GLU A:420 , LEU A:422 , GLY A:423 , PHE A:446 , HIS A:456 , HIS A:472 , ASP A:473 , ASN A:537 , PRO A:539 , ALA A:540 , HOH A:701 , HOH A:704 , HOH A:711 , HOH A:713 , HOH A:734 , LEU B:87 , ASP B:130 , SER B:134 , TYR B:136 , PHE B:261 , PHE B:265 , LYS B:268 , ASP B:329 , LEU B:330 , PHE B:331 , GLN B:336 , LEU B:337 , TRP B:338 , ALA B:363 , GLN B:364 , TYR B:367 , CYS B:370 , ARG B:371 , ASP B:373 , HIS B:374 , ILE B:415 , LYS B:416 , GLU B:420 , LEU B:422 , GLY B:423 , PHE B:446 , HIS B:456 , HIS B:472 , ASP B:473 , GLN B:525 , MET B:536 , ASN B:537 , PRO B:539 , ALA B:540 , THR B:541 , GLU B:542 , HOH B:702 , HOH B:709 , HOH B:720 , HOH B:750 , HOH B:789 , HOH B:799 , HOH B:825 , HOH B:852binding site for Poly-Saccharide residues ACR B 601 through GLC B 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CSY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CSY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CSY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CSY)

(-) Exons   (0, 0)

(no "Exon" information available for 5CSY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh....hhhhh.eeeee.hhhhh.........hhhhhhhhhhhhhh...eee......................hhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhh..........eee..................hhhhhhh..hhhhhhhhhhhhhhh.eeee.hhhhh.eeeee.ee..hhhhhhhhhhhhh...eee......hhhhhhhhhhh...eeee.hhh.........hhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....eeeeehhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5csy A  60 SVGEDFPSEYEQWLPVPDPESRRRAGVLLHPTSFRGPHGIGDLGEEAFRFIDWLHSTGCSVWQVLPLVPPDEGGSPYAGQDANCGNTLLISLDELVKDGLLIKDELPQPIDADSVNYQTANKLKSPLITKAAKRLIDGNGELKSKLLDFRNDPSISCWLEDAAYFAAIDNTLNAYSWFEWPEPLKNRHLSALEAIYESQKEFIDLFIAKQFLFQRQWQKVREYARRQGVDIMGDMPIYVGYHSADVWANKKHFLLNKKGFPLLVSGVPPDLFSETGQLWGSPLYDWKAMESDQYSWWVNRIRRAQDLYDECRIDHFRGFAGFWAVWKVGPGKSLFDAISKGVGKIKIIAEDLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLPHNHEVNQVVYSGTHDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSSTAQTAIIPMQDILGLGSSARMNTPATEVGNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379    || 400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570      
                                                                                                                                                                                                                                                                                                                                                              384|                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                               396                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:517
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh....hhhhh.eeeee.hhhhh.........hhhhhhhhhhhhhh...eee......................hhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhh.........eeee..................hhhhhhh..hhhhhhhhhhhhhhh.eeee.hhhhh.eeeeee.........eeee..hhhhhhhhhhhhh...eee......hhhhhhhhhhh...eeee.hhh.........hhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....eeeeehhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5csy B  60 SVGEDFPSEYEQWLPVPDPESRRRAGVLLHPTSFRGPHGIGDLGEEAFRFIDWLHSTGCSVWQVLPLVPPDEGGSPYAGQDANCGNTLLISLDELVKDGLLIKDELPQPIDADSVNYQTANKLKSPLITKAAKRLIDGNGELKSKLLDFRNDPSISCWLEDAAYFAAIDNTLNAYSWFEWPEPLKNRHLSALEAIYESQKEFIDLFIAKQFLFQRQWQKVREYARRQGVDIMGDMPIYVGYHSADVWANKKHFLLNKKGFPLLVSGVPPDLFSETGQLWGSPLYDWKAMESDQYSWWVNRIRRAQDLYDECRIDHFRGFAGFWAVPSEAKVAMVGRWKVGPGKSLFDAISKGVGKIKIIAEDLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLPHNHEVNQVVYSGTHDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSSTAQTAIIPMQDILGLGSSARMNTPATEVGNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CSY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CSY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CSY)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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        DPE1_ARATH | Q9LV91: 5cpq 5cps 5cpt 5cq1 5csu

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