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(-) Description

Title :  MGLUR2 WITH GLUTAMATE ANALOG
 
Authors :  J. A. Monn, D. K. Clawson
Date :  17 Jul 15  (Deposition) - 09 Sep 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutamate Receptor Analog, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Monn, L. Prieto, L. Taboada, J. Hao, M. R. Reinhard, S. S. Henry, C. D. Beadle, L. Walton, T. Man, H. Rudyk, B. Clark, D. Tupper, S. R. Baker, C. Lamas, C. Montero, A. Marcos, J. Blanco, M. Bures, D. K. Clawson, S. Atwell, F. Lu, J. Wang, M. Russell, B. A. Heinz, X. Wang J. H. Carter, B. G. Getman, J. T. Catlow, S. Swanson, B. G. Johnson, D. B. Shaw, D. L. Mckinzie
Synthesis And Pharmacological Characterization Of C4-(Thiotriazolyl) -Substituted-2-Aminobicyclo[3. 1. 0]Hexane-2, 6-Dicarboxylates Identification Of (1R, 2S, 4R, 5R, 6R)-2-Amino-4-(1H-1, 2, 4-Triazol-3-Ylsulfanyl) Bicyclo[3. 1. 0]Hexane-2, 6-Dicarboxylic Acid (Ly2812223), A Highly Potent, Functionally Selective Mglu2 Receptor Agonist.
J. Med. Chem. V. 58 7526 2015
PubMed-ID: 26313429  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01124

(-) Compounds

Molecule 1 - METABOTROPIC GLUTAMATE RECEPTOR 2
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 2-493
    Gene: GRM2, GPRC1B, MGLUR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MGLUR2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
152Q2Ligand/Ion(1R,2S,4R,5R,6R)-2-AMINO-4-(1H-1,2,4-TRIAZOL-3-YLSULFANYL)BICYCLO[3.1.0]HEXANE-2,6-DICARBOXYLIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:57 , ARG A:61 , SER A:143 , TYR A:144 , SER A:145 , ALA A:166 , SER A:167 , THR A:168 , ARG A:271 , SER A:272 , GLU A:273 , ASP A:295 , LYS A:377 , HOH A:755binding site for residue 52Q A 602
2AC2SOFTWAREARG B:57 , ARG B:61 , SER B:143 , TYR B:144 , SER B:145 , ALA B:166 , SER B:167 , THR B:168 , TYR B:216 , ARG B:271 , SER B:272 , GLU B:273 , ASP B:295 , GLY B:296 , LYS B:377binding site for residue 52Q B 601
3AC3SOFTWAREPHE A:201 , ASN A:203 , HOH A:738binding site for Mono-Saccharide NAG A 601 bound to ASN A 203

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:50 -A:92
2A:355 -A:362
3A:400 -A:407
4B:50 -B:92
5B:355 -B:362
6B:400 -B:407

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:411 -Pro A:412
2Arg B:411 -Pro B:412

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CNJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...eeeeeee..eee......eeee....hhhhhhhhhhhhhhhh..........eeeeeee...hhhhhhhhhhhhh.......eeeeee..hhhhhhhhhhhhhhh...eee....hhhhhh......eee...hhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh....eeee......hhhhhh.hhhhhh..eeeee....hhhhhhhhhh..........hhhhhhhhhh..hhhhh................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhh.eee..........eee.........eeeeeeeee.....eeeeeeeeee..eee.hhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cnj A  22 AKKVLTLEGDLVLGGLFPVHQKGGPAEDCGPVNEHRGIQRLEAMLFALDRINRDPHLLPGVRLGAHILDSCSKDTHALEQALDFVRASLPTAITGVIGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFELEARARNISVATSEKVGRAMSRAAFEGVVRALLQKPSARVAVLFTRSEDARELLAASQRLNASFTWVASDGWGALESVVAGSEGAAEGAITIELASYPISDFASYFQSLDPWNNSRNPWFREFWEQRFRCSFRQRDCAAHSLRAVPFEQESKIMFVVNAVYAMAHALHNMHRALCPNTTRLCDAMRPVNGRRLYKDFVLNVKFDAPFRPADTHNEVRFDRFGDGIGRYNIFTYLRAGSGRYRYQKVGYWAEGLTLDTSLIPWA 488
                                    31        41        51        61        71        81        91       101       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483     
                                                                                                                  110|                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                   133                                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeeeee..eee......eeee....hhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhh.........eeee..hhhhhhhhhhhhhhhh..eee.....hhhhh......eee...hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh....eeee......hhhhhh.hhhhhh..eeeee....hhhhhhhhhh..........hhhhhhhhhh............hhhhh......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhh.eee..........eee..........eeeeeeee.hhh.eeeeeeeee...eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cnj B  23 KKVLTLEGDLVLGGLFPVHQKGGPAEDCGPVNEHRGIQRLEAMLFALDRINRDPHLLPGVRLGAHILDSCSKDTHALEQALDFVRASLSPTAITGVIGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFELEARARNISVATSEKVGRAMSRAAFEGVVRALLQKPSARVAVLFTRSEDARELLAASQRLNASFTWVASDGWGALESVVAGSEGAAEGAITIELASYPISDFASYFQSLDPWNNSRNPWFREFWEQRFRCSFRQRDCAAHSLRAVPFEQESKIMFVVNAVYAMAHALHNMHRALCPNTTRLCDAMRPVNGRRLYKDFVLNVKFDAPFRPADTHNEVRFDRFGDGIGRYNIFTYLRAGSGRYRYQKVGYWAEGLTLDTSLIPWA 488
                                    32        42        52        62        72        82        92       102       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483     
                                                                                                                  111|                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                   133
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CNJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CNJ)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        GRM2_HUMAN | Q14416: 4xaq 4xas 5cni 5kzn 5kzq

(-) Related Entries Specified in the PDB File

5cni