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(-) Description

Title :  METABOTROPIC GLUTAMATE RECEPTOR IN COMPLEX WITH ANTAGONIST (1~{S}, 2~{R},3~{S},4~{S},5~{R},6~{R})-2-AZANYL-3-[[3,4-BIS(FLUORANYL) PHENYL]SULFANYLMETHYL]-4-OXIDANYL-BICYCLO[3.1.0]HEXANE-2,6-DICARBOXYLIC ACID
 
Authors :  M. D. Chappell, R. Li, S. C. Smith, B. A. Dressman, E. G. Tromiczak, A. E. T J. Blanco, T. Vetman, S. J. Quimby, J. Matt, T. Britton, A. M. Fivush, J. M. Schkeryantz, D. Mayhugh, J. A. Erickson, M. Bures, C. Jaramillo, M. Carpintero, J. E. De Diego, M. Barberis, S. Garcia-Cerrada, J. F. S S. Antonysamy, S. Atwell, I. Macewan, B. Condon, C. Bradley, J. Wang, A K. Conners, C. Groshong, S. R. Wasserman, J. W. Koss, J. M. Witkin, X. Li C. Overshiner, K. A. Wafford, W. Seidel, X. -S. Wang, B. A. Heinz, S. Swa J. Catlow, D. Bedwell, J. A. Monn, C. H. Mitch, P. Ornstein
Date :  25 Jul 16  (Deposition) - 28 Dec 16  (Release) - 04 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Mglur2, Antagonist, Antidepressent, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Chappell, R. Li, S. C. Smith, B. A. Dressman, E. G. Tromiczak, A. E. Tripp, M. J. Blanco, T. Vetman, S. J. Quimby, J. Matt, T. C. Britton A. M. Fivush, J. M. Schkeryantz, D. Mayhugh, J. A. Erickson, M. G. Bures C. Jaramillo, M. Carpintero, J. E. Diego, M. Barberis, S. Garcia-Cerrada, J. F. Soriano, S. Antonysamy, S. Atwell, I. Macewan, B. Condon, C. Sougias, J. Wang, A. Zhang, K. Conners, C. Groshong, S. R. Wasserman, J. W. Koss, J. M. Witkin, X. Li, C. Overshiner, K. A. Wafford, W. Seidel, X. S. Wang, B. A. Heinz, S. Swanson, J. T. Catlow, D. W. Bedwell, J. A. Monn, C. H. Mitch, P. L. Ornstein
Discovery Of (1S, 2R, 3S, 4S, 5R, 6R)-2-Amino-3-[(3, 4-Difluorophenyl) Sulfanylmethyl]-4-Hydroxy-Bicyclo[3. 1. 0]Hexane-2, 6-Dicarboxylic Acid Hydrochloride (Ly3020371Hcl): A Potent, Metabotropic Glutamate 2/3 Receptor Antagonist With Antidepressant-Like Activity.
J. Med. Chem. V. 59 10974 2016
PubMed-ID: 28002967

(-) Compounds

Molecule 1 - METABOTROPIC GLUTAMATE RECEPTOR 2
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: GRM2, GPRC1B, MGLUR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MGLUR2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
16YS1Ligand/Ion(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-AZANYL-3-[[3,4-BIS(FLUORANYL)PHENYL]SULFANYLMETHYL]-4-OXIDANYL-BICYCLO[3.1.0]HEXANE-2,6-DICARBOXYLIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:57 , ARG A:61 , SER A:143 , TYR A:144 , SER A:145 , ALA A:166 , SER A:167 , THR A:168 , ASP A:188 , TYR A:216 , ARG A:271 , ASP A:295 , GLY A:296binding site for residue 6YS A 601
2AC2SOFTWAREPHE A:201 , ASN A:203binding site for Mono-Saccharide NAG A 602 bound to ASN A 203

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:50 -A:92
2A:355 -A:362
3A:400 -A:407
4A:500 -A:519
5A:504 -A:522
6A:525 -A:537

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:411 -Pro A:412

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KZQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KZQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5KZQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...eeeeeee.................hhhhhhhhhhhhhhhhhh........eeeeeee...hhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhh..eee....hhhhhh......eee....hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh....eeee.............hhhhhh..eeeee......hhhhhhhh..........hhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhh....eee..........eee..........eeeeeeee....eeeeeeeee...eee.hhhh......................eeeee.......eeeee....eee.....eee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kzq A  24 KVLTLEGDLVLGGLFPVHQKPAEDCGPVNEHRGIQRLEAMLFALDRINRDPHLLPGVRLGAHILDSCSKDTHALEQALDFVRASLPTAITGVIGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFELEARARNICVATSEKVGRAMSRAAFEGVVRALLQKPSARVAVLFTRSEDARELLAASQRLNASFTWVASDGWGALESVVAGSEGAAEGAITIELASYPISDFASYFQSLDPWNNSRNPWFREFWEQRFRCSFRQRDCAAHSLRAVPFEQESKIMFVVNAVYAMAHALHNMHRALCPNTTRLCDAMRPVNGRRLYKDFVLNVKFDAPFRPADTHNEVRFDRFGDGIGRYNIFTYLRAGGRYRYQKVGYWAEGLTLDTSLIPWASPSAGPLPASRCSEPCLQNEVKSVQPGEVCCWLCIPCQPYEYRLDEFTCADCGLGYWPNASLT 551
                                    33        43|       55        65        75        85        95       105    || 137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457    || 468       478       488       498       508       518       528       538       548   
                                              43|                                                             110|                                                                                                                                                                                                                                                                                                                                      462|                                                                                       
                                               46                                                              133                                                                                                                                                                                                                                                                                                                                       464
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KZQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KZQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KZQ)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        GRM2_HUMAN | Q14416: 4xaq 4xas 5cni 5cnj 5kzn

(-) Related Entries Specified in the PDB File

5kzn