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(-) Description

Title :  OLIGOMER CRYSTAL STRUCTURE OF CC CHEMOKINE 5 (CCL5)
 
Authors :  W. G. Liang, W. -J. Tang
Date :  16 Jul 15  (Deposition) - 13 Apr 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.09
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Cc Chemokine, High Oligomer, Cytokine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. G. Liang, C. G. Triandafillou, T. Y. Huang, M. M. Zulueta, S. Banerjee, A. R. Dinner, S. C. Hung, W. J. Tang
Structural Basis For Oligomerization And Glycosaminoglycan Binding Of Ccl5 And Ccl3.
Proc. Natl. Acad. Sci. Usa V. 113 5000 2016
PubMed-ID: 27091995  |  Reference-DOI: 10.1073/PNAS.1523981113

(-) Compounds

Molecule 1 - C-C MOTIF CHEMOKINE 5
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 27-91
    GeneCCL5, D17S136E, SCYA5
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymEOCP,EOSINOPHIL CHEMOTACTIC CYTOKINE,SIS-DELTA,SMALL- INDUCIBLE CYTOKINE A5,T CELL-SPECIFIC PROTEIN P228,TCP228,T-CELL- SPECIFIC PROTEIN RANTES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1SO411Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:31 , GLY A:32binding site for residue SO4 A 103
2AC2SOFTWARELYS A:56 , ARG A:59 , LYS F:56binding site for residue SO4 A 104
3AC3SOFTWARELYS B:55 , LYS B:56binding site for residue SO4 B 101
4AC4SOFTWAREARG B:17binding site for residue SO4 B 102
5AC5SOFTWARELYS C:55 , LYS C:56binding site for residue SO4 C 101
6AC6SOFTWARELYS E:55 , LYS E:56binding site for residue SO4 E 101
7AC7SOFTWARELYS F:55 , LYS F:56binding site for residue SO4 F 101

(-) SS Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1A:10 -A:34
2A:11 -A:50
3B:10 -B:34
4B:11 -B:50
5C:10 -C:34
6C:11 -C:50
7D:10 -D:34
8D:11 -D:50
9E:10 -E:34
10E:11 -E:50
11F:10 -F:34
12F:11 -F:50

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CMD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CMD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CMD)

(-) Exons   (0, 0)

(no "Exon" information available for 5CMD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5cmd A  5 SDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS 68
                                    14        24        34        44        54        64    

Chain B from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5cmd B  4 SSDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEM 67
                                    13        23        33        43        53        63    

Chain C from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5cmd C  5 SDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS 68
                                    14        24        34        44        54        64    

Chain D from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5cmd D  5 SDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS 68
                                    14        24        34        44        54        64    

Chain E from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5cmd E  5 SDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS 68
                                    14        24        34        44        54        64    

Chain F from PDB  Type:PROTEIN  Length:63
                                                                                              
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.........hhh.eeeeee.........eeeee....eeee...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  5cmd F  5 SDTTPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKWVREYINSLEM 67
                                    14        24        34        44        54        64   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CMD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CMD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CMD)

(-) Gene Ontology  (121, 121)

Asymmetric/Biological Unit(hide GO term definitions)

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  CCL5_HUMAN | P13501
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCL5_HUMAN | P135011b3a 1eqt 1hrj 1rtn 1rto 1u4l 1u4m 1u4p 1u4r 2l9h 2vxw 5coy 5dnf 5uiw

(-) Related Entries Specified in the PDB File

5cor 5coy 5d65 5dnf