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(-) Description

Title :  STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE GLGE APO FORM AT 3.13A RESOLUTION
 
Authors :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Date :  13 Jul 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.13
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glge, Maltose, Gh13, Maltosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Structure Of Mycobacterium Thermoresistibile Glge Defines Novel Conformational States That Contribute To The Catalyti Mechanism.
Sci Rep V. 5 17144 2015
PubMed-ID: 26616850  |  Reference-DOI: 10.1038/SREP17144

(-) Compounds

Molecule 1 - ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE MALTOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.99.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLGE, KEK_12948
    Organism Scientific: MYCOBACTERIUM THERMORESISTIBILE ATCC 19527
    Organism Taxid: 1078020

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CJ5)

(-) Sites  (0, 0)

(no "Site" information available for 5CJ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJ5)

(-) Cis Peptide Bonds  (4, 5)

Asymmetric/Biological Unit
No.Residues
1Gln A:11 -Pro A:12
2Pro A:372 -Pro A:373
3Gln B:11 -Pro B:12
4Pro B:372 -Pro B:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJ5)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJ5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:649
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..hhhhh..eeee....eeeeeeee......eeeeeeeee.......................ee.....eeeeee.....eeeeeeeeeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......eeeeeeeeeeeeee......eeeee..hhhhhee.....ee..hhhhhh.hhhhhhhhh..eeee..............................................hhhhhhhhhhhhhh....eeeee..ee...............ee...ee...ee..ee....ee.....hhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eee............h.hhhhhhh.....eeee.......hhhhhhhhhhhhhhhhhhhhhh..eee...............................hhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee....eee.......eeeee............eeeee......eee........eeeee...hhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cj5 A   0 SVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPPGVPGPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLDAGQGESELNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPEWFTVLPDGSIAYAENPPKKYQDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHLAYSKFDPGTGDTVLVVDMPELGMEPYDRFWVRDEITGEEYQWGDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     9        19        29        39        49        59        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      |479       489       499       509       519       529       539       549       559       569       579       589       605       615    || 640       650       660 ||    677       687         
                                                                                               68|                                                                                                                                                                                                                                                                                                                                                                                                475|                                                                                                                     597|             620|                       662|                          
                                                                                                88                                                                                                                                                                                                                                                                                                                                                                                                 477                                                                                                                      604              636                        670                          


Chain B from PDB  Type:PROTEIN  Length:678
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee............eeee....eeeeeeee......eeeeeeeeeee................eeeeeee.....eeeeee.....eeeeeeeeeeehhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeee...eeeeeehhhhh.eeeee..hhhhhh..........hhhhhhhhhhhhhhhh..eeee...............................................hhhhhhhhhhhhh...eeeeee...................ee...ee....................hhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh..eee.hhhhh...hhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhhhhhhhhhhh...eeeee.............................hhhhhhhh........hhhhhhhhhhhhhh.....ee.......eeeeee.......eeeeeee........eeee.hhhhhh......eeeee.....eeee..eeee........eeeeee...hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cj5 B   0 SVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPPGVPGPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLDAGQGESELNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPEWFTVLPDGSIAYAENPPKKYQDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTEFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHVDNDALLAYSKFDPGTGDTVLVVVTLNPFGAEEATLWLDMPELGMEPYDRFWVRDEITGEEYQWGQANYVRLDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     9        19        29        39        49        59        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688        
                                                                                               68|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                88
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJ5)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5cj5)
 
  Cis Peptide Bonds
    Gln A:11 - Pro A:12   [ RasMol ]  
    Gln B:11 - Pro B:12   [ RasMol ]  
    Pro A:372 - Pro A:373   [ RasMol ]  
    Pro B:372 - Pro B:373   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G7CL00_MYCT3 | G7CL00: 5cgm 5cim

(-) Related Entries Specified in the PDB File

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