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(-) Description

Title :  CRYSTAL STRUCTURE OF E. COLI FABI BOUND TO THE THIOCARBAMOYLATED BENZODIAZABORINE INHIBITOR 35B.
 
Authors :  C. A. Jordan, J. L. Vey
Date :  09 Jul 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Antibiotics, Nad, Enoyl-Acp Reductase, Oxidoreducatase- Oxidoreducatase Inhibitor Complex, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Jordan, B. A. Sandoval, M. V. Serobyan, D. H. Gilling, M. P. Groziak, H. H. Xu, J. L. Vey
Crystallographic Insights Into The Structure-Activity Relationships Of Diazaborine Enoyl-Acp Reductase Inhibitors
Acta Crystallogr. , Sect. F V. 71 1521 2015
PubMed-ID: 26625295  |  Reference-DOI: 10.1107/S2053230X15022098

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] FABI
    Chains: A, B
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FABI, ENVM, B1288, JW1281
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: ENR,NADH-DEPENDENT ENOYL-ACP REDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CJ32Ligand/Ion1-HYDROXY-2,3,1-BENZODIAZABORININE-2(1H)-CARBOTHIOAMIDE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CJ34Ligand/Ion1-HYDROXY-2,3,1-BENZODIAZABORININE-2(1H)-CARBOTHIOAMIDE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , ALA A:15 , SER A:19 , ILE A:20 , GLN A:40 , LEU A:44 , CYS A:63 , ASP A:64 , VAL A:65 , SER A:91 , ILE A:92 , GLY A:93 , ILE A:119 , LEU A:144 , SER A:145 , TYR A:156 , MET A:159 , LYS A:163 , ALA A:189 , GLY A:190 , PRO A:191 , ILE A:192 , HOH A:625 , HOH A:641 , HOH A:658 , HOH A:684 , HOH A:691binding site for residues NAD A 500 and CJ3 A 501
2AC2SOFTWAREGLY B:13 , ALA B:15 , SER B:19 , ILE B:20 , GLN B:40 , CYS B:63 , ASP B:64 , VAL B:65 , SER B:91 , ILE B:92 , GLY B:93 , PHE B:94 , LEU B:144 , SER B:145 , TYR B:146 , TYR B:156 , MET B:159 , LYS B:163 , ALA B:189 , GLY B:190 , PRO B:191 , ILE B:192 , HOH B:604 , HOH B:607binding site for residues NAD B 500 and CJ3 B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CG2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CG2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CG2)

(-) Exons   (0, 0)

(no "Exon" information available for 5CG2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhhhhhhh.....eeee..hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cg2 A   2 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIREAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMN 257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191 ||    218       228       238       248         
                                                                                                                                                                                                                         193|                                              
                                                                                                                                                                                                                          211                                              


Chain B from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhh..eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhhhhhhh.....eeee..hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cg2 B   2 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPICEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMN 257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191||     218       228       238       248         
                                                                                                                                                                                                                        192|                                               
                                                                                                                                                                                                                         210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CG2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CG2)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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  5cg2
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  FABI_ECOLI | P0AEK4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABI_ECOLI | P0AEK4: 1c14 1d8a 1dfg 1dfh 1dfi 1i2z 1i30 1lx6 1lxc 1mfp 1qg6 1qsg 2fhs 3pjd 3pje 3pjf 4jqc 4jx8 5cfz 5cg1

(-) Related Entries Specified in the PDB File

5cfz 5cg1