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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARH BOUND TO ADENOSYLCOBALAMIN AND A 26-BP DNA SEGMENT
 
Authors :  M. Jost, C. L. Drennan
Date :  25 Jun 15  (Deposition) - 30 Sep 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.89
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,I,J  (1x)
Biol. Unit 2:  E,F,G,H,K,L  (1x)
Keywords :  Transcription Factor, Light Sensor, Adenosylcobalamin-Binding, Dna- Binding, Transcription Regulator-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jost, J. Fernandez-Zapata, M. C. Polanco, J. M. Ortiz-Guerrero, P. Y. Chen, G. Kang, S. Padmanabhan, M. Elias-Arnanz, C. L. Drennan
Structural Basis For Gene Regulation By A B12-Dependent Photoreceptor.
Nature V. 526 536 2015
PubMed-ID: 26416754  |  Reference-DOI: 10.1038/NATURE14950

(-) Compounds

Molecule 1 - LIGHT-DEPENDENT TRANSCRIPTIONAL REGULATOR CARH
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 STAR PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TT_P0056
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- 163 / DSM 7039)
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
 
Molecule 2 - 26-MER DNA SEGMENT CONTAINING THE CARH OPERATOR SEQUENCE (ANTISENSE STRAND)
    Chains: I, K
    Engineered: YES
    Organism Scientific: THERMUS THERMOPHILUS HB27
    Organism Taxid: 262724
    Synthetic: YES
 
Molecule 3 - 26-MER DNA SEGMENT CONTAINING THE CARH OPERATOR SEQUENCE (SENSE STRAND)
    Chains: J, L
    Engineered: YES
    Organism Scientific: THERMUS THERMOPHILUS HB27
    Organism Taxid: 262724
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD    IJ  
Biological Unit 2 (1x):     EFGH  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
15AD8Ligand/Ion5'-DEOXYADENOSINE
2B128Ligand/IonCOBALAMIN
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
15AD4Ligand/Ion5'-DEOXYADENOSINE
2B124Ligand/IonCOBALAMIN
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
15AD4Ligand/Ion5'-DEOXYADENOSINE
2B124Ligand/IonCOBALAMIN

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:121 , LEU A:124 , HIS A:132 , GLU A:141 , HIS A:142 , SER A:145 , GLY A:174 , ARG A:176 , HIS A:177 , GLU A:178 , ILE A:179 , GLY A:180 , LEU A:183 , VAL A:220 , SER A:222 , VAL A:224 , LEU A:225 , GLY A:247 , GLY A:248 , GLN A:249 , MET A:264 , LEU A:267 , 5AD A:301binding site for residue B12 A 300
02AC2SOFTWARETRP A:131 , VAL A:138 , GLU A:141 , HIS A:142 , B12 A:300 , ASP B:201binding site for residue 5AD A 301
03AC3SOFTWARELEU B:121 , LEU B:124 , ARG B:125 , GLY B:128 , HIS B:132 , GLU B:141 , HIS B:142 , SER B:145 , GLY B:174 , ARG B:176 , HIS B:177 , GLU B:178 , ILE B:179 , GLY B:180 , LEU B:183 , VAL B:220 , SER B:222 , VAL B:224 , LEU B:225 , GLY B:247 , GLY B:248 , GLN B:249 , MET B:264 , LEU B:267 , 5AD B:301binding site for residue B12 B 300
04AC4SOFTWAREASP A:201 , TRP B:131 , VAL B:138 , GLU B:141 , HIS B:142 , B12 B:300binding site for residue 5AD B 301
05AC5SOFTWARELEU C:121 , LEU C:124 , ARG C:125 , HIS C:132 , GLU C:141 , HIS C:142 , SER C:145 , GLY C:174 , ARG C:176 , HIS C:177 , GLU C:178 , ILE C:179 , GLY C:180 , LEU C:183 , VAL C:220 , SER C:222 , VAL C:224 , LEU C:225 , GLY C:247 , GLY C:248 , GLN C:249 , MET C:264 , LEU C:267 , 5AD C:301binding site for residue B12 C 300
06AC6SOFTWARETRP C:131 , VAL C:138 , GLU C:141 , HIS C:142 , B12 C:300 , ASP D:201binding site for residue 5AD C 301
07AC7SOFTWARELEU D:121 , LEU D:124 , ARG D:125 , GLY D:128 , HIS D:132 , GLU D:141 , HIS D:142 , SER D:145 , GLY D:174 , ARG D:176 , HIS D:177 , GLU D:178 , ILE D:179 , GLY D:180 , LEU D:183 , VAL D:220 , SER D:222 , VAL D:224 , LEU D:225 , GLY D:247 , GLY D:248 , GLN D:249 , MET D:264 , LEU D:267 , 5AD D:301binding site for residue B12 D 300
08AC8SOFTWAREASP C:201 , TRP D:131 , VAL D:138 , GLU D:141 , HIS D:142 , B12 D:300binding site for residue 5AD D 301
09AC9SOFTWARELEU E:124 , ARG E:125 , HIS E:132 , GLU E:141 , HIS E:142 , SER E:145 , GLY E:174 , ARG E:176 , HIS E:177 , GLU E:178 , ILE E:179 , GLY E:180 , LEU E:183 , VAL E:220 , SER E:222 , VAL E:224 , LEU E:225 , GLY E:247 , GLY E:248 , GLN E:249 , MET E:264 , LEU E:267 , 5AD E:301binding site for residue B12 E 300
10AD1SOFTWARETRP E:131 , VAL E:138 , GLU E:141 , HIS E:142 , B12 E:300 , ASP F:201binding site for residue 5AD E 301
11AD2SOFTWARELEU F:121 , LEU F:124 , ARG F:125 , GLY F:128 , HIS F:132 , GLU F:141 , HIS F:142 , SER F:145 , GLY F:174 , ARG F:176 , HIS F:177 , GLU F:178 , ILE F:179 , GLY F:180 , LEU F:183 , VAL F:220 , SER F:222 , VAL F:224 , LEU F:225 , GLY F:247 , GLY F:248 , GLN F:249 , MET F:264 , LEU F:267 , 5AD F:301binding site for residue B12 F 300
12AD3SOFTWAREASP E:201 , TRP F:131 , VAL F:138 , GLU F:141 , HIS F:142 , B12 F:300binding site for residue 5AD F 301
13AD4SOFTWARELEU G:121 , LEU G:124 , ARG G:125 , HIS G:132 , GLU G:141 , HIS G:142 , SER G:145 , GLY G:174 , ARG G:176 , HIS G:177 , GLU G:178 , ILE G:179 , GLY G:180 , LEU G:183 , VAL G:220 , SER G:222 , VAL G:224 , LEU G:225 , GLY G:247 , GLY G:248 , GLN G:249 , MET G:264 , LEU G:267 , 5AD G:301binding site for residue B12 G 300
14AD5SOFTWARETRP G:131 , VAL G:138 , GLU G:141 , HIS G:142 , B12 G:300 , ASP H:201binding site for residue 5AD G 301
15AD6SOFTWARELEU H:121 , LEU H:124 , ARG H:125 , GLY H:128 , HIS H:132 , GLU H:141 , HIS H:142 , SER H:145 , GLY H:174 , ARG H:176 , HIS H:177 , GLU H:178 , ILE H:179 , GLY H:180 , LEU H:183 , VAL H:220 , SER H:222 , VAL H:224 , LEU H:225 , GLY H:247 , GLY H:248 , GLN H:249 , MET H:264 , 5AD H:301binding site for residue B12 H 300
16AD7SOFTWAREASP G:201 , TRP H:131 , VAL H:138 , GLU H:141 , HIS H:142 , B12 H:300binding site for residue 5AD H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C8E)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Phe A:32 -Pro A:33
2Phe B:32 -Pro B:33
3Phe C:32 -Pro C:33
4Phe E:32 -Pro E:33
5Phe F:32 -Pro F:33
6Phe G:32 -Pro G:33

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C8E)

(-) Exons   (0, 0)

(no "Exon" information available for 5C8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh....hhhhhhhhhhhh.....ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh...eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e A   5 GVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLP 277
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   


Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhh.hhhhhhhhhh.......ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c8e B   5 GVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRGP 280
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274      


Chain C from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh....hhhhhhhhhhhh.....ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e C   0 HMTSSGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPR 278
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269         


Chain D from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e D  76 QEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRGP 280
                                    85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275     


Chain E from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh....hhhhhhhhhhhh.....ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh...eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e E   6 VYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPR 278
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275   


Chain F from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhh.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c8e F   6 VYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRG 279
                                    15        25        35 ||     49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279
                                                          37|                                                                                                                                                                                                                                             
                                                           42                                                                                                                                                                                                                                             


Chain G from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh....hhhhhhhhhhhh.....ee.....ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e G   0 HMTSSGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRG 279
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279


Chain H from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8e H  77 EVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLP 277
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276 


Chain I from PDB  Type:DNA  Length:26
                                                          
                 5c8e I   1 ATAGGTTTTGTCAAGCTTTTGTACAT  26
                                    10        20      


Chain J from PDB  Type:DNA  Length:26
                                                          
                 5c8e J   1 ATGTACAAAAGCTTGACAAAACCTAT  26
                                    10        20      


Chain K from PDB  Type:DNA  Length:26
                                                          
                 5c8e K   1 ATAGGTTTTGTCAAGCTTTTGTACAT  26
                                    10        20      


Chain L from PDB  Type:DNA  Length:26
                                                          
                 5c8e L   1 ATGTACAAAAGCTTGACAAAACCTAT  26
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C8E)

(-) Gene Ontology  (4, 4)

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  5c8e
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  Q746J7_THET2 | Q746J7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q746J7_THET2 | Q746J7: 3whp 5c8a 5c8d 5c8f

(-) Related Entries Specified in the PDB File

5c8a 5c8d 5c8f