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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGTH THERMUS THERMOPHILUS CARH BOUND TO ADENOSYLCOBALAMIN (DARK STATE)
 
Authors :  M. Jost, C. L. Drennan
Date :  25 Jun 15  (Deposition) - 30 Sep 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Transcription Factor, Light Sensor, Adenosylcobalamin-Binding, Dna- Binding, Transcriptional Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jost, J. Fernandez-Zapata, M. C. Polanco, J. M. Ortiz-Guerrero, P. Y. Chen, G. Kang, S. Padmanabhan, M. Elias-Arnanz, C. L. Drennan
Structural Basis For Gene Regulation By A B12-Dependent Photoreceptor.
Nature V. 526 536 2015
PubMed-ID: 26416754  |  Reference-DOI: 10.1038/NATURE14950

(-) Compounds

Molecule 1 - LIGHT-DEPENDENT TRANSCRIPTIONAL REGULATOR CARH
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 STAR PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TT_P0056
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- 163 / DSM 7039)
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
15AD8Ligand/Ion5'-DEOXYADENOSINE
2B128Ligand/IonCOBALAMIN
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
15AD4Ligand/Ion5'-DEOXYADENOSINE
2B124Ligand/IonCOBALAMIN
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
15AD4Ligand/Ion5'-DEOXYADENOSINE
2B124Ligand/IonCOBALAMIN

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:117 , LEU A:121 , LEU A:124 , GLY A:128 , GLU A:141 , HIS A:142 , SER A:145 , GLY A:174 , GLU A:175 , ARG A:176 , HIS A:177 , GLU A:178 , ILE A:179 , GLY A:180 , VAL A:220 , SER A:222 , VAL A:224 , LEU A:225 , GLY A:247 , GLY A:248 , GLN A:249 , MET A:264 , ASP A:266 , LEU A:267 , 5AD A:301binding site for residue B12 A 300
02AC2SOFTWARETRP A:131 , VAL A:138 , GLU A:141 , HIS A:142 , B12 A:300 , ASP B:201binding site for residue 5AD A 301
03AC3SOFTWARELEU B:121 , LEU B:124 , ARG B:125 , GLY B:128 , TRP B:131 , HIS B:132 , GLU B:141 , HIS B:142 , SER B:145 , ARG B:149 , GLY B:174 , GLU B:175 , ARG B:176 , HIS B:177 , GLU B:178 , ILE B:179 , GLY B:180 , VAL B:220 , SER B:222 , VAL B:224 , LEU B:225 , GLY B:247 , GLY B:248 , GLN B:249 , MET B:264 , ASP B:266 , LEU B:267 , 5AD B:301 , ALA H:231binding site for residue B12 B 300
04AC4SOFTWAREASP A:201 , PRO A:203 , TRP B:131 , VAL B:138 , GLU B:141 , HIS B:142 , B12 B:300binding site for residue 5AD B 301
05AC5SOFTWAREGLU C:117 , LEU C:121 , LEU C:124 , ARG C:125 , GLY C:128 , GLU C:129 , TRP C:131 , HIS C:132 , GLU C:141 , HIS C:142 , SER C:145 , GLY C:174 , GLU C:175 , ARG C:176 , HIS C:177 , GLU C:178 , ILE C:179 , GLY C:180 , LEU C:183 , VAL C:220 , SER C:222 , VAL C:224 , LEU C:225 , GLY C:247 , GLY C:248 , GLN C:249 , MET C:264 , ASP C:266 , LEU C:267 , 5AD C:301binding site for residue B12 C 300
06AC6SOFTWARETRP C:131 , VAL C:138 , GLU C:141 , HIS C:142 , B12 C:300 , ASP D:201 , PRO D:203binding site for residue 5AD C 301
07AC7SOFTWARELEU D:121 , LEU D:124 , ARG D:125 , GLY D:128 , TRP D:131 , HIS D:132 , GLU D:141 , HIS D:142 , SER D:145 , ARG D:149 , GLY D:174 , GLU D:175 , ARG D:176 , HIS D:177 , GLU D:178 , ILE D:179 , GLY D:180 , VAL D:220 , SER D:222 , VAL D:224 , LEU D:225 , GLY D:247 , GLY D:248 , GLN D:249 , MET D:264 , ASP D:266 , LEU D:267 , 5AD D:301 , ARG F:230binding site for residue B12 D 300
08AC8SOFTWAREASP C:201 , PRO C:203 , TRP D:131 , VAL D:138 , GLU D:141 , HIS D:142 , B12 D:300binding site for residue 5AD D 301
09AC9SOFTWARELEU E:121 , LEU E:124 , ARG E:125 , GLY E:128 , TRP E:131 , GLU E:141 , HIS E:142 , SER E:145 , GLY E:174 , GLU E:175 , ARG E:176 , HIS E:177 , GLU E:178 , ILE E:179 , GLY E:180 , VAL E:220 , SER E:222 , VAL E:224 , LEU E:225 , GLY E:247 , GLY E:248 , GLN E:249 , MET E:264 , ASP E:266 , LEU E:267 , 5AD E:301binding site for residue B12 E 300
10AD1SOFTWARETRP E:131 , VAL E:138 , GLU E:141 , HIS E:142 , B12 E:300 , ASP F:201binding site for residue 5AD E 301
11AD2SOFTWAREALA D:231 , LEU F:121 , LEU F:124 , ARG F:125 , GLY F:128 , TRP F:131 , HIS F:132 , GLU F:141 , HIS F:142 , SER F:145 , ARG F:149 , GLY F:174 , GLU F:175 , ARG F:176 , HIS F:177 , GLU F:178 , ILE F:179 , GLY F:180 , LEU F:183 , VAL F:220 , SER F:222 , VAL F:224 , LEU F:225 , GLY F:247 , GLY F:248 , GLN F:249 , MET F:264 , ASP F:266 , LEU F:267 , 5AD F:301binding site for residue B12 F 300
12AD3SOFTWAREASP E:201 , PRO E:203 , TRP F:131 , VAL F:138 , GLU F:141 , HIS F:142 , B12 F:300binding site for residue 5AD F 301
13AD4SOFTWARELEU G:121 , LEU G:124 , ARG G:125 , GLY G:128 , TRP G:131 , HIS G:132 , GLU G:141 , HIS G:142 , SER G:145 , GLY G:174 , GLU G:175 , ARG G:176 , HIS G:177 , GLU G:178 , ILE G:179 , GLY G:180 , VAL G:220 , LEU G:221 , SER G:222 , VAL G:224 , LEU G:225 , GLY G:247 , GLY G:248 , GLN G:249 , MET G:264 , LEU G:267 , 5AD G:301binding site for residue B12 G 300
14AD5SOFTWARETRP G:131 , VAL G:138 , GLU G:141 , HIS G:142 , B12 G:300 , ASP H:201 , PRO H:203binding site for residue 5AD G 301
15AD6SOFTWARELEU H:121 , LEU H:124 , ARG H:125 , GLY H:128 , TRP H:131 , HIS H:132 , GLU H:141 , HIS H:142 , SER H:145 , GLY H:174 , GLU H:175 , ARG H:176 , HIS H:177 , GLU H:178 , ILE H:179 , GLY H:180 , LEU H:183 , VAL H:220 , SER H:222 , VAL H:224 , LEU H:225 , GLY H:247 , GLY H:248 , GLN H:249 , MET H:264 , ASP H:266 , LEU H:267 , 5AD H:301binding site for residue B12 H 300
16AD7SOFTWAREASP G:201 , PRO G:203 , TRP H:131 , VAL H:138 , GLU H:141 , HIS H:142 , B12 H:300binding site for residue 5AD H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C8D)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Phe D:32 -Pro D:33
2Phe E:32 -Pro E:33
3Phe F:32 -Pro F:33
4Phe G:32 -Pro G:33
5Phe H:32 -Pro H:33

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C8D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C8D)

(-) Exons   (0, 0)

(no "Exon" information available for 5C8D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d A  48 EDVEALKTIKRWLEEIRRYLAVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALW 275
                                    57    ||  74||      86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266         
                                         62|   75|                                                                                                                                                                                                     
                                          70    78                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d B  50 VEALKTIKRWPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWL 276
                                    59|       75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275 
                                    59|                                                                                                                                                                                                                  
                                     66                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d C  53 LKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALW 275
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   


Chain D from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhh.hhhhhhhhhhhhh....ee.....eeeehhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d D   4 SGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWL 276
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273   


Chain E from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.hhhhhhhhhhhhh....ee.....ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh...........eeeee....hhhhhhhhh.ee.....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d E   4 SGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRGPEKE 283
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283


Chain F from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eehhhhhhhh..hhhhhhhhhhhhh....ee...eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c8d F   5 GVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWL 276
                                    14        24        34    ||  46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276
                                                             39|                                                                                                                                                                                                                                          
                                                              42                                                                                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d G   4 SGVYTIAEVEAMTGLSAEVLRQWERRYGFPKYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWL 276
                                    13        23        33||      53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273   
                                                         34|                                                                                                                                                                                                                                       
                                                          45                                                                                                                                                                                                                                       


Chain H from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eehhhhhhhhh.hhhhhhhhhhhhh.......eehhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......eeee.......hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhh...eeeee...hhhhhh............eeee....hhhhhhhhh.ee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c8d H  -6 LVPRGSHMTSVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLP 277
                                     3|       15        25        35 ||     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       
                                     3|                             37|                                                                                                                                                                                                                                          
                                      6                              43
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C8D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C8D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C8D)

(-) Gene Ontology  (4, 4)

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        Q746J7_THET2 | Q746J7: 3whp 5c8a 5c8e 5c8f

(-) Related Entries Specified in the PDB File

5c8a 5c8e 5c8f