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(-) Description

Title :  FUSOBACTERIUM ULCERANS ZTP RIBOSWITCH BOUND TO ZMP
 
Authors :  C. P. Jones, A. R. Ferre-D'Amare
Date :  03 Jun 15  (Deposition) - 12 Aug 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. P. Jones, A. R. Ferre-D'Amare
Recognition Of The Bacterial Alarmone Zmp Through Long-Distance Association Of Two Rna Subdomains.
Nat. Struct. Mol. Biol. V. 22 679 2015
PubMed-ID: 26280533  |  Reference-DOI: 10.1038/NSMB.3073

(-) Compounds

Molecule 1 - RNA (62-MER)
    Chains: B, A
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1AMZ2Ligand/IonAMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE
2K1Ligand/IonPOTASSIUM ION
3MG12Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1AMZ1Ligand/IonAMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE
2K-1Ligand/IonPOTASSIUM ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1AMZ1Ligand/IonAMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE
2K-1Ligand/IonPOTASSIUM ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH B:204binding site for residue MG B 101
02AC2SOFTWAREC B:65binding site for residue MG B 102
03AC3SOFTWAREU B:16 , C B:35 , AMZ B:108 , HOH B:202 , HOH B:203binding site for residue MG B 103
04AC4SOFTWAREA A:22 , G B:21 , A B:22binding site for residue MG B 104
05AC5SOFTWAREU B:12 , G B:13binding site for residue MG B 105
06AC6SOFTWAREU B:16 , U B:40binding site for residue MG B 106
07AC7SOFTWAREU B:16 , G B:17 , A B:34 , C B:35 , G B:63 , C B:69 , U B:70 , G B:71 , MG B:103 , HOH B:202 , HOH B:203binding site for residue AMZ B 108
08AC8SOFTWAREG B:27binding site for residue K B 109
09AC9SOFTWAREU A:16 , U A:40binding site for residue MG A 102
10AD1SOFTWAREU A:16 , C A:35 , AMZ A:106 , HOH A:201 , HOH A:202binding site for residue MG A 103
11AD2SOFTWAREG A:20 , HOH A:203binding site for residue MG A 104
12AD3SOFTWAREU A:16 , G A:17 , A A:34 , C A:35 , G A:63 , C A:69 , U A:70 , G A:71 , MG A:103 , HOH A:201binding site for residue AMZ A 106

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BTP)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:62
                                                                                             
                  5btp A  6 GUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAACGGCCGACCGUCUGGGCG 75
                                    15        25        35        45     || 63        73  
                                                                        51|               
                                                                         60               


Chain B from PDB  Type:RNA  Length:62
                                                                                             
                  5btp B  6 GUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAAAUGCCGACCGUCUGGGCG 75
                                    15        25        35        45   ||   63        73  
                                                                      49|                 
                                                                       58
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BTP)

(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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