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(-) Description

Title :  CRYSTAL STRUCTURE OF HA33A, A NEUROTOXIN-ASSOCIATED PROTEIN FROM CLOSTRIDIUM BOTULINUM TYPE A
 
Authors :  J. W. Arndt, J. Gu, L. Jaroszewski, R. Schwarzenbacher, M. Hanson, F. J. Lebeda, R. C. Stevens
Date :  20 Dec 04  (Deposition) - 22 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Trefoil, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Arndt, J. Gu, L. Jaroszewski, R. Schwarzenbacher, M. A. Hanson, F. J. Lebeda, R. C. Stevens
The Structure Of The Neurotoxin-Associated Protein Ha33/A From Clostridium Botulinum Suggests A Reoccurring Beta-Trefoil Fold In The Progenitor Toxin Complex.
J. Mol. Biol. V. 346 1083 2005
PubMed-ID: 15701519  |  Reference-DOI: 10.1016/J.JMB.2004.12.039
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NON-TOXIN HAEMAGGLUTININ HA34
    Chains: A, B
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Strain: SEROTYPE A, HALL STRAIN
    Synonym: HA33A, HA33/A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YBI)

(-) Sites  (0, 0)

(no "Site" information available for 1YBI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YBI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:77 -Pro A:78
2Ala B:77 -Pro B:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YBI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YBI)

(-) Exons   (0, 0)

(no "Exon" information available for 1YBI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with Q45871_CLOBO | Q45871 from UniProtKB/TrEMBL  Length:293

    Alignment length:284
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
         Q45871_CLOBO    10 SLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNP 293
               SCOP domains d1ybia1 A:10-151 automated matches                                                                                                            d1ybia2 A:152-293 automated matches                                                                                                            SCOP domains
               CATH domains 1ybiA01 A:10-152  [code=2.80.10.50, no name defined]                                                                                           1ybiA02 A:153-293  [code=2.80.10.50, no name defined]                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee......eeeee....eeeee....hhhh.eeeeehhhhhhh..eeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.hhhh..eeeee.....hhhh.eeeee......eeeeee..eeeeeeee.hhh......eeeee...hhhh.eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ybi A  10 SLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNP 293
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    


Chain B from PDB  Type:PROTEIN  Length:284
 aligned with Q45871_CLOBO | Q45871 from UniProtKB/TrEMBL  Length:293

    Alignment length:284
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289    
         Q45871_CLOBO    10 SLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNP 293
               SCOP domains d1ybib1 B:10-151 automated matches                                                                                                            d1ybib2 B:152-293 automated matches                                                                                                            SCOP domains
               CATH domains 1ybiB01 B:10-152  [code=2.80.10.50, no name defined]                                                                                           1ybiB02 B:153-293  [code=2.80.10.50, no name defined]                                                                                         CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-1ybiB01 B:164-291                                                                                               -- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-1ybiB02 B:164-291                                                                                               -- Pfam domains (2)
         Sec.struct. author .....eeeeee..eeeeeeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee..eeeeeeeee....eeeee....hhhh.eeeeehhhhhhh..eeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.hhhh..eeeee.....hhhh.eeeee......eeeeee..eeeeeeee.hhh......eeeee...hhhh.eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ybi B  10 SLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNP 293
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Trefoil (131)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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    Ala A:77 - Pro A:78   [ RasMol ]  
    Ala B:77 - Pro B:78   [ RasMol ]  
 
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        Q45871_CLOBO | Q45871: 4lo0 4lo1 4lo2 4lo3 4lo7 5bp5 5bqu

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