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(-) Description

Title :  CRYSTAL STRUCTURE OF HEME BINDING PROTEIN HMUT Y240A
 
Authors :  N. Muraki, S. Aono
Date :  20 Apr 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Heme, Abc Transporter, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Muraki, C. Kitatsuji, M. Ogura, T. Uchida, K. Ishimori, S. Aono
Structural Characterization Of Heme Environmental Mutants O Cghmut That Shuttles Heme Molecules To Heme Transporters
Int J Mol Sci V. 17 2016
PubMed-ID: 27240352  |  Reference-DOI: 10.3390/IJMS17060829

(-) Compounds

Molecule 1 - ABC-TYPE TRANSPORTER, PERIPLASMIC COMPONENT
    Atcc: 13032
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET22
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-359
    Gene: CGL0389
    Mutation: YES
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM ATCC 13032
    Organism Taxid: 196627
    Strain: ATCC 13032
    Synonym: HMUT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:87 , LEU A:101 , TYR A:102 , VAL A:123 , SER A:124 , GLY A:140 , HIS A:141 , ARG A:242 , TYR A:255 , MET A:297 , GLU A:299 , ASP A:332 , HOH A:542 , HOH A:618binding site for residue HEM A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B50)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:76 -Pro A:77
2Gly A:163 -Pro A:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B50)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B50)

(-) Exons   (0, 0)

(no "Exon" information available for 5B50)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhh..eee...................eeee.....eeee.....eee....hhhhhhhhhh.hhhhh........hhhhh.....ee...eehhhhhhhh...eeee.....hhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee......eeee.hhhhhhhhhhhh..eehhhhh....eee.hhhhhhhhh..eeeeehhhhhhhhhhhhhh.......hhhhhh..eeeehhhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b50 A  33 SNGDLIEEIQASSTSTDPRTFTGLSIVEDIGDVVPVTDNASPALPVSLTDADGNDVVVEDVSRILPLDLYGTYSKTIAGLGLVDNIVGRTVSSTEPALADTEVVTTGGHTLNAEAILNLHPTLVIIDHSIGPREVIDQIRAAGVATVIMSPQRSIASIGDDIRDIASVVGLPEEGEKLAERSVAEVEEASTVVDELTPEDPLKMVFLAARGTGGVFFILGDAYGGRDLIEGLGGVDMAAEKGIMDLAPANAEALAELNPDVFVMMSEGLVSTGGIDGLMERPGIAQTTAGQNQRVLALPDGQSLAFGAQTGELLLRASRELYVQ 356
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B50)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B50)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B50)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5B50)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8NTB8_CORGL | Q8NTB8: 5az3 5b4z 5b51

(-) Related Entries Specified in the PDB File

5az3 5AZ3 CONTAINS THE WILD TYPE HMUT FROM CORYNEBACTERIUM GLUTAMICUM.
5b4z
5b51