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(-) Description

Authors :  T. Kumasaka, N. Miyano, S. Baba, S. Matsumoto, T. Kataoka, F. Shima
Date :  07 Feb 16  (Deposition) - 01 Jun 16  (Release) - 01 Jun 16  (Revision)
Resolution :  1.56
Chains :  Asym./Biol. Unit :  A
Keywords :  Oncoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  S. Matsumoto, N. Miyano, S. Baba, J. Liao, T. Kawamura, C. Tsuda, A. Takeda, M. Yamamoto, T. Kumasaka, T. Kataoka, F. Shima
Molecular Mechanism For Conformational Dynamics Of Ras-Gtp Elucidated From In-Situ Structural Transition In Crystal
Sci Rep V. 6 25931 2016
PubMed-ID: 27180801  |  Reference-DOI: 10.1038/SREP25931

(-) Compounds

Molecule 1 - GTPASE HRAS
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPGEX-6P-1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneHRAS, HRAS1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
1AC1SOFTWAREGLY A:12 , GLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , ALA A:18 , PHE A:28 , VAL A:29 , ASP A:30 , GLU A:31 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , GLN A:61 , ASN A:116 , LYS A:117 , ASP A:119 , LEU A:120 , SER A:145 , ALA A:146 , LYS A:147 , HOH A:175 , HOH A:189 , MG A:203 , HOH A:336 , HOH A:342 , HOH A:352 , HOH A:365 , HOH A:406 , HOH A:413 , HOH A:425binding site for residue GNP A 201
2AC2SOFTWAREPHE A:28 , ASP A:30 , GLU A:31 , ASP A:33 , HOH A:396 , HOH A:434binding site for residue CA A 202
3AC3SOFTWARESER A:17 , THR A:35 , GNP A:201 , HOH A:336 , HOH A:342binding site for residue MG A 203
4AC4SOFTWAREARG A:102 , ASP A:105 , HOH A:415binding site for residue CA A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B2Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B2Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5B2Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:166
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B2Z)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B2Z)

(-) Gene Ontology  (64, 64)

Asymmetric/Biological Unit(hide GO term definitions)


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        RASH_HUMAN | P01112121p 1aa9 1agp 1bkd 1clu 1crp 1crq 1crr 1ctq 1gnp 1gnq 1gnr 1he8 1iaq 1ioz 1jah 1jai 1k8r 1lf0 1lf5 1lfd 1nvu 1nvv 1nvw 1nvx 1p2s 1p2t 1p2u 1p2v 1plj 1plk 1pll 1q21 1qra 1rvd 1wq1 1xcm 1xd2 1xj0 1zvq 1zw6 221p 2c5l 2ce2 2cl0 2cl6 2cl7 2clc 2cld 2evw 2gdp 2lcf 2lwi 2n42 2n46 2q21 2quz 2rga 2rgb 2rgc 2rgd 2rge 2rgg 2uzi 2vh5 2x1v 3ddc 3i3s 3k8y 3k9l 3k9n 3kkm 3kkn 3kud 3l8y 3l8z 3lbh 3lbi 3lbn 3lo5 3oiu 3oiv 3oiw 3rry 3rrz 3rs0 3rs2 3rs3 3rs4 3rs5 3rs7 3rsl 3rso 3tgp 421p 4dlr 4dls 4dlt 4dlu 4dlv 4dlw 4dlx 4dly 4dlz 4dst 4dsu 4efl 4efm 4efn 4g0n 4g3x 4k81 4l9s 4l9w 4nyi 4nyj 4nym 4q21 4rsg 4uru 4urv 4urw 4urx 4ury 4urz 4us0 4us1 4us2 4xvq 4xvr 521p 5b30 5e95 5p21 621p 6q21 721p 821p

(-) Related Entries Specified in the PDB File