5B2Z - JenaLib

Title :   H-RAS WT IN COMPLEX WITH GPPNHP (STATE 2*) BEFORE STRUCTURAL TRANSITION BY HUMIDITY CONTROL

Authors :   T. Kumasaka, N. Miyano, S. Baba, S. Matsumoto, T. Kataoka, F. Shima

Date :   07 Feb 16 (Deposition) - 01 Jun 16 (Release) - 01 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.56

Chains :   Asym./Biol. Unit : A

Keywords :   Oncoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Matsumoto, N. Miyano, S. Baba, J. Liao, T. Kawamura, C. Tsuda, A. Takeda, M. Yamamoto, T. Kumasaka, T. Kataoka, F. Shima
Molecular Mechanism For Conformational Dynamics Of Ras-Gtp Elucidated From In-Situ Structural Transition In Crystal
Sci Rep V. 6 25931 2016
PubMed-ID: 27180801 | Reference-DOI: 10.1038/SREP25931

Compounds

Molecule 1 - GTPASE HRAS
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HRAS, HRAS1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:12 , GLY A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , ALA A:18 , PHE A:28 , VAL A:29 , ASP A:30 , GLU A:31 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , GLN A:61 , ASN A:116 , LYS A:117 , ASP A:119 , LEU A:120 , SER A:145 , ALA A:146 , LYS A:147 , HOH A:175 , HOH A:189 , MG A:203 , HOH A:336 , HOH A:342 , HOH A:352 , HOH A:365 , HOH A:406 , HOH A:413 , HOH A:425	binding site for residue GNP A 201
2	AC2	SOFTWARE	PHE A:28 , ASP A:30 , GLU A:31 , ASP A:33 , HOH A:396 , HOH A:434	binding site for residue CA A 202
3	AC3	SOFTWARE	SER A:17 , THR A:35 , GNP A:201 , HOH A:336 , HOH A:342	binding site for residue MG A 203
4	AC4	SOFTWARE	ARG A:102 , ASP A:105 , HOH A:415	binding site for residue CA A 204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b2z A   1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (64, 64)

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	Sites
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		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

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