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(-) Description

Title :  CRYSTAL STRUCTURE OF ERDJ5 FORM II
 
Authors :  S. Watanabe, K. Maegawa, K. Inaba
Date :  22 Aug 15  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Pdi Family, Thioredoxin, Endoplasmic Reticulum, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Maegawa, S. Watanabe, M. Okumura, K. Noi, M. Inoue, R. Ushioda, T. Ogura, K. Nagata, K. Inaba
Highly Dynamic Nature Of Erdj5 Is Essential For Enhancement Of The Er Associated Degradation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNAJ HOMOLOG SUBFAMILY C MEMBER 10
    Chains: A
    EC Number: 1.8.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ORIGAMI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-793
    Gene: DNAJC10, ERDJ5, JPDI
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ENDOPLASMIC RETICULUM DNA J DOMAIN-CONTAINING PROTEIN 5, ERDJ5,ENDOPLASMIC RETICULUM DNAJ-PDI FUSION PROTEIN 1,J DOMAIN- CONTAINING PROTEIN DISULFIDE ISOMERASE-LIKE PROTEIN,JPDI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11PS1Ligand/Ion3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:761 , GLN A:762 , ASN A:764 , SER A:765binding site for residue 1PS A 801

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:186 -A:193
2A:264 -A:270
3A:294 -A:301
4A:403 -A:410
5A:508 -A:515
6A:616 -A:623
7A:728 -A:735

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:201 -Pro A:202
2Tyr A:523 -Pro A:524
3Tyr A:631 -Pro A:632
4Tyr A:743 -Pro A:744

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AYL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AYL)

(-) Exons   (0, 0)

(no "Exon" information available for 5AYL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:743
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh.........eee.hhhhhhhhhh....eeeeee.........hhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeee......eee....hhhhhhhhhhh.....eeee...hhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhh...eeeeeee...hhhhhhhh......eeee..............eee...hhhhhhhhhhhhh...ee......hhhhhhheeeeeee........hhhhhhhhhhhhhh.eeeeeee...hhhhhhhh.....eeeee.......eee.....hhhhhhhhhhhhhh..eee.............eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee..eeeee....hhhhhhhhhhhhhh...ee.hhhhhhhhh........eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeee........ee......hhhhhhhhhhh......ee.hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeeeeeehhhheeeeeee...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ayl A  33 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCQQYHSFCTQENVQRYPEIRFYPQKSAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 783
                                    42        52        62       |74        84        94       104 ||    118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638  ||   650       660       670       680       690       700       710       720       730       740       750       760       770       780   
                                                                70|                              106|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               641|                                                                                                                                           
                                                                 73                               111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                644
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AYL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AYL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AYL)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  1.8.4.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DJC10_MOUSE | Q9DC23: 3apo 3apq 3aps 5ayk

(-) Related Entries Specified in the PDB File

5ayk