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(-) Description

Title :  CRYSTAL STRUCTURE OF ERDJ5 FORM I
 
Authors :  S. Watanabe, K. Maegawa, K. Inaba
Date :  22 Aug 15  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Pdi Family, Thioredoxin, Endoplasmic Reticulum, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Maegawa, S. Watanabe, M. Okumura, K. Noi, M. Inoue, R. Ushioda, T. Ogura, K. Nagata, K. Inaba
Highly Dynamic Nature Of Erdj5 Is Essential For Enhancement Of The Er Associated Degradation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNAJ HOMOLOG SUBFAMILY C MEMBER 10
    Chains: A
    EC Number: 1.8.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ORIGAMI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-793
    Gene: DNAJC10, ERDJ5, JPDI
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ENDOPLASMIC RETICULUM DNA J DOMAIN-CONTAINING PROTEIN 5, ERDJ5,ENDOPLASMIC RETICULUM DNAJ-PDI FUSION PROTEIN 1,J DOMAIN- CONTAINING PROTEIN DISULFIDE ISOMERASE-LIKE PROTEIN,JPDI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
11PS1Ligand/Ion3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2CL1Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:112 , GLU A:113 , SER A:114binding site for residue 1PS A 801
2AC2SOFTWARESER A:158binding site for residue CL A 802

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:186 -A:193
2A:294 -A:301
3A:403 -A:410
4A:508 -A:515
5A:616 -A:623
6A:728 -A:735

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:201 -Pro A:202
2Tyr A:523 -Pro A:524
3Tyr A:631 -Pro A:632
4Tyr A:743 -Pro A:744

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AYK)

(-) Exons   (0, 0)

(no "Exon" information available for 5AYK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:744
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh.....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh.........eee.hhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeee......eee....hhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhhhhh...eeeeeee...hhhhhh....eeeee..............eee...hhhhhhhhhhhhh...eeehhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhh.eeeeeee...hhhhhhhh.....eeeee.......eee.....hhhhhhhhhhhhhh..eee.hhhhh.......eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeeee..eeee.....hhhhhhhhhhhhhh...eeehhhhhhhhh........eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhh......eeeee..........ee......hhhhhhhhhhh......ee.hhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeeeeee....eeeeeee...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ayk A  34 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDSTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNNDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCQQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 783
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 ||    316       326       336       346       356       366       376|      389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779    
                                                                                                                                                                                                                                                                                                         305|                                                                376|                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                          309                                                                 380
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AYK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AYK)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DJC10_MOUSE | Q9DC23: 3apo 3apq 3aps 5ayl

(-) Related Entries Specified in the PDB File

5ayl