5AY4 - JenaLib

Title :   CRYSTAL STRUCTURE OF RNA DUPLEX CONTAINING C-C BASE PAIRS OBTAINED IN THE PRESENCE OF HG(II)

Authors :   J. Kondo, Y. Tada, T. Dairaku, H. Saneyoshi, I. Okamoto, Y. Tanaka, A. On

Date :   06 Aug 15 (Deposition) - 21 Oct 15 (Release) - 11 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Rna, X-Ray Analysis, Metallo Base Pair, Ag(I), Hg(Ii) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Kondo, Y. Tada, T. Dairaku, H. Saneyoshi, I. Okamoto, Y. Tanaka, A. Ono
High-Resolution Crystal Structure Of A Silver(I)-Rna Hybrid Duplex Containing Watson-Crick-Like Csilver(I)C Metallo-Bas Pairs
Angew. Chem. Int. Ed. Engl. V. 54 13323 2015
PubMed-ID: 26448329 | Reference-DOI: 10.1002/ANIE.201507894

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	C B:12	binding site for residue NA B 101
2	AC2	SOFTWARE	CBR A:6 , G A:7 , A A:8 , C A:12 , HOH A:149 , U B:5 , A B:8 , HOH B:203 , HOH B:208 , HOH B:212 , HOH B:220 , HOH B:226 , HOH B:227 , HOH B:228 , HOH B:233 , HOH B:238 , HOH B:243 , HOH B:257 , HOH B:261	binding site for Di-nucleotide CBR B 6 and G B 7

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA/RNA  Length:12
                                           
                  5ay4 A  1 GGACUxGACUCC 12
                                 |  10  
                                 6-CBR

Chain B from PDB  Type:DNA/RNA  Length:12
                                           
                  5ay4 B  1 GGACUxGACUCC 12
                                 |  10  
                                 6-CBR

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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