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(-) Description

Title :  CRYSTAL STRUCTURE OF PORCINE RNASE 4
 
Authors :  S. Liang, K. R. Acharya
Date :  24 Sep 15  (Deposition) - 20 Jan 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Ribonuclease 4, Rna Degradation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liang, K. R. Acharya
Structural Basis Of Substrate Specificity In Porcine Rnase 4.
Febs J. V. 283 912 2016
PubMed-ID: 26748441  |  Reference-DOI: 10.1111/FEBS.13646

(-) Compounds

Molecule 1 - RIBONUCLEASE 4
    Chains: A
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: RNASE, RIBONUCLEASE PL3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:9 , VAL A:13 , PRO A:15 , SER A:36 , PRO A:90 , HOH A:315 , HOH A:332BINDING SITE FOR RESIDUE EDO A1120
2AC2SOFTWAREHIS A:37 , GLN A:68 , MET A:69 , ASN A:70BINDING SITE FOR RESIDUE EDO A1121

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:25 -A:81
2A:39 -A:92
3A:57 -A:107
4A:64 -A:71

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:89 -Pro A:90
2Asn A:110 -Pro A:111

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AR6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AR6)

(-) Exons   (0, 0)

(no "Exon" information available for 5AR6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.........eeeee..hhhhhhhhh.............eeeeeeeeeeeee..........eeeeeeeeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ar6 A  -2 AAMQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK 119
                                     7        17        27        37        47        57        67        77        87        97       107       117
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AR6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AR6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AR6)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RNAS4_PIG | P15468: 5arj 5ark 5arl

(-) Related Entries Specified in the PDB File

5arj CRYSTAL STRUCTURE OF PORCINE RNASE 4 D80A MUTANT
5ark CRYSTAL STRUCTURE OF PORCINE RNASE 4 IN COMPLEX WITH DUMP
5arl CRYSTAL STRUCTURE OF PORCINE RNASE 4 D80A MUTANT IN COMPLEX WITH DCMP