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(-) Description

Title :  MTH1 IN COMPLEX WITH COMPOUND 15
 
Authors :  J. A. Read, J. Breed
Date :  08 Sep 15  (Deposition) - 02 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Nudt1, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. G. Kettle, H. Alwan, M. Bista, J. Breed, N. L. Davies, K. Eckersley, S. Fillery, K. M. Foote, L. Goodwin, D. R. Jones, H. Kack, A. Lau, J. W. Nissink, J. Read, J. S. Scott, B. Taylor, G. Walker, L. Wissler, M. Wylot
Potent And Selective Inhibitors Of Mth1 Probe Its Role In Cancer Cell Survival.
J. Med. Chem. V. 59 2346 2016
PubMed-ID: 26878898  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01760

(-) Compounds

Molecule 1 - 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
    ChainsA
    EC Number3.6.1.55, 3.6.1.56
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantGOLD
    FragmentUNP RESIDUES 42-197
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym2-HYDROXY-DATP DIPHOSPHATASE, 8-OXO-DGTPASE, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1, NUDIX MOTIF 1, MTH1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
158T1Ligand/Ion13-(METHYLAMINO)-23,24,25-TRIOXA-17,18,19,21-TETRAZATETRACYCLO-TRICOSA-1(3),2(10),4(11),12(14),13(18),16(19)-HEXAN-15-ONE
2DMS1Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:148 , THR A:149 , LEU A:150BINDING SITE FOR RESIDUE DMS A1157
2AC2SOFTWARETYR A:7 , THR A:8 , LEU A:9 , PHE A:27 , ASN A:33 , GLY A:34 , GLY A:36 , GLY A:37 , PHE A:72 , VAL A:83 , TRP A:117 , ASP A:119 , ASP A:120BINDING SITE FOR RESIDUE 58T A1158

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ANU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ANU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ANU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ANU)

(-) Exons   (0, 0)

(no "Exon" information available for 5ANU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...eeeeeee........ee.eeee.....hhhhhhhhhhhhhhh.ee...eeeeeeeeee.....eeeeeeeee..ee........eeeeeee.hhhhhhhh..hhhhhhhhhhh..eeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5anu A   3 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 156
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ANU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ANU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ANU)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        8ODP_HUMAN | P366391iry 3q93 3whw 3zr0 3zr1 4c9w 4c9x 4n1t 4n1u 5ans 5ant 5anv 5anw 5fsi 5fsk 5fsl 5fsm 5fsn 5fso 5ghi 5ghj 5ghm 5ghn 5gho 5ghp 5ghq 5ws7

(-) Related Entries Specified in the PDB File

5anv MTH1 IN COMPLEX WITH COMPOUND 15
5anw MTH1 IN COMPLEX WITH COMPOUND 24