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(-) Description

Title :  POTENT AND SELECTIVE INHIBITORS OF MTH1 PROBE ITS ROLE IN CANCER CELL SURVIVAL
 
Authors :  J. G. Kettle, H. Alwan, M. Bista, J. Breed, H. Kack, K. Eckersley, K. M. Fo S. Fillery, L. Goodwin, D. Jones, A. Lau, J. W. M. Nissink, J. Read, J. Sc B. Taylor, G. Walker, L. Wissler
Date :  08 Sep 15  (Deposition) - 02 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Mth1, Oncology, Hydrolase, Nucleotide Hydrolysis, Inhibition (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Kettle, H. Alwan, M. Bista, J. Breed, N. L. Davies, K. Eckersley, S. Fillery, K. M. Foote, L. Goodwin, D. R. Jones, H. Kack, A. Lau, J. W. Nissink, J. Read, J. S. Scott, B. Taylor, G. Walker, L. Wissler, M. Wylot
Potent And Selective Inhibitors Of Mth1 Probe Its Role In Cancer Cell Survival.
J. Med. Chem. V. 59 2346 2016
PubMed-ID: 26878898  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01760

(-) Compounds

Molecule 1 - 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
    Chains: A, B, C
    EC Number: 3.6.1.55, 3.6.1.56
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: GOLD
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 2-HYDROXY-DATP DIPHOSPHATASE, 8-OXO-DGTPASE, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1, NUDIX MOTIF 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1RJE3Ligand/Ion2-(2-METHOXYETHOXY)-6-(METHYLAMINO)-9-(PHENYLMETHYL)-7H-PURIN-8-ONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1RJE1Ligand/Ion2-(2-METHOXYETHOXY)-6-(METHYLAMINO)-9-(PHENYLMETHYL)-7H-PURIN-8-ONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1RJE1Ligand/Ion2-(2-METHOXYETHOXY)-6-(METHYLAMINO)-9-(PHENYLMETHYL)-7H-PURIN-8-ONE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1RJE1Ligand/Ion2-(2-METHOXYETHOXY)-6-(METHYLAMINO)-9-(PHENYLMETHYL)-7H-PURIN-8-ONE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:9 , PHE A:27 , ASN A:33 , GLY A:34 , GLY A:36 , GLY A:37 , PHE A:72 , MET A:81 , VAL A:83 , TRP A:117 , ASP A:119 , ASP A:120BINDING SITE FOR RESIDUE RJE A1157
2AC2SOFTWARETHR B:8 , LEU B:9 , ASN B:33 , GLY B:34 , GLY B:36 , GLY B:37 , PHE B:72 , MET B:81 , VAL B:83 , TRP B:117 , ASP B:119 , ASP B:120BINDING SITE FOR RESIDUE RJE B1157
3AC3SOFTWARETHR C:8 , LEU C:9 , ASN C:33 , GLY C:34 , GLY C:36 , GLY C:37 , PHE C:72 , MET C:81 , VAL C:83 , TRP C:117 , ASP C:119 , ASP C:120BINDING SITE FOR RESIDUE RJE C1157

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ANT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ANT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ANT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ANT)

(-) Exons   (0, 0)

(no "Exon" information available for 5ANT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeee........ee.eeee.....hhhhhhhhhhhhhhh......eeeeeeeeee.....eeeeeeeee............eeeeeee....hhhhh..hhhhhhhhhhh...eeeeeeee...eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ant A   2 GASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     


Chain B from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeee........ee.eeee.....hhhhhhhhhhhhhhh......eeeeeeeeee.....eeeeeeeee............eeeeeee....hhhhh..hhhhhhhhhh....eeeeeeee...eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ant B   2 GASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     


Chain C from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...eeeeeee........ee..........hhhhhhhhhhhhhhh.ee...eeeeeeeeee......eeeeeeee..ee........eeeeeee....hhhhh..hhhhhhhhhh....eeeeeeee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ant C   4 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV 156
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ANT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ANT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ANT)

(-) Gene Ontology  (26, 26)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        8ODP_HUMAN | P36639: 1iry 3q93 3whw 3zr0 3zr1 4c9w 4c9x 4n1t 4n1u 5ans 5anu 5anv 5anw 5fsi 5fsk 5fsl 5fsm 5fsn 5fso 5ghi 5ghj 5ghm 5ghn 5gho 5ghp 5ghq 5ws7

(-) Related Entries Specified in the PDB File

5anm CRYSTAL STRUCTURE OF IGE FC IN COMPLEX WITH A NEUTRALIZING ANTIBODY
5ans POTENT AND SELECTIVE INHIBITORS OF MTH1 PROBE ITS ROLE IN CANCER CELL SURVIVAL