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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS IN COMPLEX WITH THE ADDUCT AN2690-AMP
 
Authors :  H. Zhao, A. Palencia, E. Seiradake, Z. Ghaemi, Z. Luthey-Schulten, S. C S. A. Martinis
Date :  02 Feb 15  (Deposition) - 01 Jul 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Aminoacyl-Trna Synthetase, Aminoacylation, Protein Synthesis, Proof-Reading Mechanisms, Antifungal Target (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhao, A. Palencia, E. Seiradake, Z. Ghaemi, S. Cusack, Z. Luthey-Schulten, S. Martinis
Analysis Of The Resistance Mechanism Of A Benzoxaborole Inhibitor Reveals Insight Into The Leucyl-Trna Synthetase Editing Mechanism.
Acs Chem. Biol. V. 10 2277 2015
PubMed-ID: 26172575  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00291

(-) Compounds

Molecule 1 - POTENTIAL CYTOSOLIC LEUCYL TRNA SYNTHETASE
    Atcc: MYA-2876
    Chains: A
    EC Number: 6.1.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI K12
    Expression System Taxid: 83333
    Expression System Variant: DH10B
    Expression System Vector: PET21D
    Expression System Vector Type: PLASMID
    Fragment: EDITING DOMAIN (CP1), UNP RESIDUES 280-530
    Organism Scientific: CANDIDA ALBICANS
    Organism Taxid: 237561
    Strain: SC5314

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ANZ1Ligand/Ion[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYLDIHYDROGEN PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:315 , THR A:316 , LEU A:317 , THR A:321 , ARG A:366 , LEU A:404 , LYS A:407 , VAL A:412 , ASP A:418 , SER A:419 , LYS A:483 , TYR A:487 , HOH A:2022 , HOH A:2099 , HOH A:2101 , HOH A:2113 , HOH A:2196 , HOH A:2197BINDING SITE FOR RESIDUE ANZ A1817

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AGJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AGJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AGJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5AGJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.hhhhhhhhhhh.......eeeeeeee.hhhhhhhh.eeee....eeeeeeee..eeeeehhhhhhhhhh.............eeeehhhhh..eee........eeeee............eee....hhhhhhhhhhhhhh......hhhhh.......ee......hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhee........hhhhhhhhhhhhhhhh..eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5agj A 279 GYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYDE 528
                                   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AGJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AGJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AGJ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  6.1.1.4
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(-) Related Entries Specified in the PDB File

5agh CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS MUTANT K510A
5agi CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS MUTANT K510A IN COMPLEX WITH THE ADDUCT FORMED BY AN2690-AMP