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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS MUTANT K510A
 
Authors :  H. Zhao, A. Palencia, E. Seiradake, Z. Ghaemi, Z. Luthey-Schulten, S. C S. A. Martinis
Date :  02 Feb 15  (Deposition) - 01 Jul 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym./Biol. Unit :  A
Keywords :  Ligase, Aminoacyl-Trna Synthetase, Aminoacylation, Protein Synthesis, Proof-Reading Mechanisms, Antifungal Target (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhao, A. Palencia, E. Seiradake, Z. Ghaemi, S. Cusack, Z. Luthey-Schulten, S. Martinis
Analysis Of The Resistance Mechanism Of A Benzoxaborole Inhibitor Reveals Insight Into The Leucyl-Trna Synthetase Editing Mechanism.
Acs Chem. Biol. V. 10 2277 2015
PubMed-ID: 26172575  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00291

(-) Compounds

Molecule 1 - POTENTIAL CYTOSOLIC LEUCYL TRNA SYNTHETASE
    Atcc: MYA-2876
    Chains: A
    EC Number: 6.1.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI K12
    Expression System Taxid: 83333
    Expression System Variant: DH10B
    Expression System Vector: PET21D
    Expression System Vector Type: PLASMID
    Fragment: EDITING DOMAIN (CP1), UNP RESIDUES 280-530
    Mutation: YES
    Organism Scientific: CANDIDA ALBICANS
    Organism Taxid: 237561
    Strain: SC5314

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:316 , THR A:321 , THR A:413 , ASP A:422 , HOH A:2026 , HOH A:2147BINDING SITE FOR RESIDUE ACT A1529
2AC2SOFTWAREASP A:386 , LYS A:500 , TYR A:501 , ASP A:516BINDING SITE FOR RESIDUE ACT A1530

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AGH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AGH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AGH)

(-) Exons   (0, 0)

(no "Exon" information available for 5AGH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee.hhhhhhhhhhh.......eeeeeeee.hhhhhhhh.........eeeeeeee..eeeeehhhhhhhhhhh.......eeeehhhhh.....................................hhhhhhhhhhhhhhhhhhh.hhhhh.......ee......hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhee........hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5agh A 279 GYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFERGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAAPKVKQDLIDEGLAFVYNEP 529
                                   288       298       308       318       328       338       348       358 ||    373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523      
                                                                                                           360|                                                                                                                                                                   
                                                                                                            366
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AGH)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (9, 9)

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  5agh
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 Related Entries

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(-) Related Entries Specified in the PDB File

5agi CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS MUTANT K510A IN COMPLEX WITH THE ADDUCT FORMED BY AN2690-AMP
5agj CRYSTAL STRUCTURE OF THE LEURS EDITING DOMAIN OF CANDIDA ALBICANS IN COMPLEX WITH THE ADDUCT AN2690-AMP
5ah5 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF AGROBACTERIUM RADIOBACTER K84 AGNB2 LEURS-TRNA-LEUAMS