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(-) Description

Title :  CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A THIAZOLIDINONE LIGAND
 
Authors :  D. A. Robinson, D. Spinks, V. C. Smith, S. Thompson, A. Smith, L. S. Torri S. P. Mcelroy, S. Brand, R. Brenk, J. A. Frearson, K. D. Read, P. G. Wyatt I. H. Gilbert
Date :  29 Jan 15  (Deposition) - 07 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  N-Myristoyltransferase, Nmt, Acyltransferase, Transferase, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Spinks, V. Smith, S. Thompson, D. A. Robinson, T. Luksch, A. Smith, L. S. Torrie, S. Mcelroy, L. Stojanovski, S. Norval, I. T. Collie, I. Hallyburton, B. Rao, S. Brand, R. Brenk, J. A. Frearson, K. D. Read, P. G. Wyatt, I. H. Gilbert
Development Of Small-Molecule Trypanosoma Brucei N- Myristoyltransferase Inhibitors: Discovery And Optimisation Of A Novel Binding Mode.
Chemmedchem V. 10 1821 2015
PubMed-ID: 26395087  |  Reference-DOI: 10.1002/CMDC.201500301

(-) Compounds

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 5-421
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15PE1Ligand/Ion(2R)-2-(4-HYDROXY-3-METHOXYPHENYL)-3-(PYRIDIN-2-YLMETHYL)-1,3-THIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:81 , GLU A:82 , ASP A:83 , PHE A:88 , PHE A:90 , TYR A:217 , HIS A:219 , PHE A:232 , SER A:330 , LEU A:341 , TYR A:345 , ASN A:376 , ASP A:396 , GLY A:397 , HOH A:2286BINDING SITE FOR RESIDUE 5PE A1422
2AC2SOFTWAREHIS A:12 , ALA A:13 , PHE A:14 , TRP A:15 , ASN A:79 , TYR A:80 , VAL A:81 , PHE A:168 , LEU A:169 , CYS A:170 , VAL A:171 , ARG A:176 , GLU A:177 , LYS A:178 , ARG A:179 , LEU A:180 , ALA A:181 , PRO A:182 , THR A:189 , VAL A:192 , ASN A:193 , ALA A:200 , TYR A:202 , THR A:203 , LEU A:208 , TYR A:404 , HOH A:2006 , HOH A:2167 , HOH A:2171 , HOH A:2296 , HOH A:2297 , HOH A:2298 , HOH A:2299 , HOH A:2300BINDING SITE FOR RESIDUE MYA A1423

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AG6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:209 -Thr A:210

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AG6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AG6)

(-) Exons   (0, 0)

(no "Exon" information available for 5AG6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh....hhhhhhhh..........hhhhh..........eeee.....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhh....hhh.eeeeee.....eeeeeeeeeeeee...hhhhhhhhhhh.hhhhhhh....eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee........eeeeeeeee.hhhhhhhh.....hhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhh....ee..hhhhhhhhhh.....eeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeeeee...hhhhhhhhhhhhhhhh...eeeee...hhhhhh.....eeeeeeeeeeee.......hhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ag6 A  11 AHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEAADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPNYIPDWHVAVRRKADKKLLAFIAGVPVTLRMGTPKYMKVKAQEKGEGEEAAKYDEPRHICEINFLCVHKQLREKRLAPILIKEATRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPMAMLKRNYQLPSAPKNSGLREMKPSDVPQVRRILMNYLDSFDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVML 421
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    || 249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419  
                                                                                                                                                                                                                                                          235|                                                                                                                                                                                
                                                                                                                                                                                                                                                           245
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AG6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AG6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AG6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4Q5S8_LEIMA | Q4Q5S8: 2wsa 3h5z 4a2z 4a30 4a31 4a32 4a33 4c7h 4c7i 4cgl 4cgm 4cgn 4cgo 4cgp 4cyn 4cyo 4cyp 4cyq 4ucm 4ucn 4ucp 5a27 5a28 5ag4 5ag5 5ag7 5age 5g20 5g21

(-) Related Entries Specified in the PDB File

5ag4 CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N- MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A THIAZOLIDINONE LIGAND
5ag5 CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N- MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A THIAZOLIDINONE LIGAND
5ag7 CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N- MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A BENZOMORPHOLINE LIGAND
5age CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N- MYRISTOYLTRANSFERASE (NMT) WITH BOUND MYRISTOYL-COA AND A BENZOMORPHOLINONE LIGAND