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(-) Description

Title :  HUMAN ALDEHYDE DEHYDROGENASE 1A1 WITH DUOCARMYCIN ANALOG
 
Authors :  M. F. Koch, S. Harteis, I. D. Blank, G. Pestel, L. F. Tietze, C. Ochsenfel S. Schneider, S. A. Sieber
Date :  11 Aug 15  (Deposition) - 26 Aug 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Oxidoreductase, Oxidation-Reduction Process, Aldehyde Dehydrogenase Activity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. F. Koch, S. Harteis, I. D. Blank, G. Pestel, L. F. Tietze, C. Ochsenfeld, S. Schneider, S. A. Sieber
Structural, Biochemical, And Computational Studies Reveal The Mechanism Of Selective Aldehyde Dehydrogenase 1A1 Inhibition By Cytotoxic Duocarmycin Analogues.
Angew. Chem. Int. Ed. Engl. V. 54 13550 2015
PubMed-ID: 26373694  |  Reference-DOI: 10.1002/ANIE.201505749

(-) Compounds

Molecule 1 - RETINAL DEHYDROGENASE 1
    Chains: A
    EC Number: 1.2.1.36
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RALDH 1, RALDH1, ALDH-E1, ALHDII, ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER A1, ALDEHYDE DEHYDROGENASE CYTOSOLIC, ALDEHYDE DEHYDROGENASE 1A1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1K9P1Ligand/Ion1-[(1S)-1-METHYL-5-OXIDANYL-1,2-DIHYDROBENZO[E]INDOL-3-YL]HEXAN-1-ONE
2TXE1Ligand/Ion[[(2R,3S,4R,5R)-5-[(3R)-3-AMINOCARBONYL-3,4-DIHYDRO-2H-PYRIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANIDYL-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE
3YB3Ligand/IonYTTERBIUM (III) ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1K9P4Ligand/Ion1-[(1S)-1-METHYL-5-OXIDANYL-1,2-DIHYDROBENZO[E]INDOL-3-YL]HEXAN-1-ONE
2TXE4Ligand/Ion[[(2R,3S,4R,5R)-5-[(3R)-3-AMINOCARBONYL-3,4-DIHYDRO-2H-PYRIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANIDYL-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE
3YB-1Ligand/IonYTTERBIUM (III) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:171 , MET A:175 , TRP A:178 , PHE A:290 , HIS A:293 , GLY A:294 , TYR A:297 , CYS A:302 , ILE A:304 , TYR A:457 , GLY A:458BINDING SITE FOR RESIDUE K9P A1502
2AC2SOFTWAREASP A:283BINDING SITE FOR RESIDUE YB A1503
3AC3SOFTWAREILE A:166 , ILE A:167 , PRO A:168 , TRP A:169 , ASN A:170 , LYS A:193 , ALA A:195 , GLU A:196 , GLY A:226 , GLY A:230 , ALA A:231 , PHE A:244 , THR A:245 , GLY A:246 , SER A:247 , VAL A:250 , GLU A:269 , GLY A:271 , CYS A:303 , GLU A:349 , GLN A:350 , LYS A:353 , GLU A:400 , PHE A:402 , YB A:1508 , HOH A:2085 , HOH A:2089 , HOH A:2122 , HOH A:2123BINDING SITE FOR RESIDUE TXE A1504
4AC4SOFTWAREHOH A:2016 , HOH A:2017 , HOH A:2018 , HOH A:2124 , HOH A:2130 , HOH A:2164 , HOH A:2165BINDING SITE FOR RESIDUE YB A1507
5AC5SOFTWARETXE A:1504 , HOH A:2089 , HOH A:2091 , HOH A:2122 , HOH A:2123 , HOH A:2163 , HOH A:2166 , HOH A:2167BINDING SITE FOR RESIDUE YB A1508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AC2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AC2)

(-) Exons   (0, 0)

(no "Exon" information available for 5AC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:494
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee...ee.....ee..eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ac2 A   8 DLPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKISQKNS 501
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AC2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AC2)

(-) Gene Ontology  (17, 17)

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  5ac2
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  AL1A1_HUMAN | P00352
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  1.2.1.36
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AL1A1_HUMAN | P00352: 4wb9 4wj9 4wp7 4wpn 4x4l 5l2m 5l2n 5l2o

(-) Related Entries Specified in the PDB File

5abm SHEEP ALDEHYDE DEHYDROGENASE 1A1
5ac0 OVIS ARIES ALDEHYDE DEHYDROGENASE 1A1 IN COMPLEX WITH A DUOCARMYCIN ANALOG
5ac1 SHEEP ALDEHYDE DEHYDROGENASE 1A1 WITH DUOCARMYCIN ANALOG INHIBITOR