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(-) Description

Title :  HUMAN ALDH1A1 COMPLEXED WITH NADH
 
Authors :  C. A. Morgan, T. D. Hurley
Date :  02 Sep 14  (Deposition) - 10 Dec 14  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. A. Morgan, T. D. Hurley
Development Of A High-Throughput In Vitro Assay To Identify Selective Inhibitors For Human Aldh1A1.
Chem. Biol. Interact. V. 234 29 2015
PubMed-ID: 25450233  |  Reference-DOI: 10.1016/J.CBI.2014.10.028

(-) Compounds

Molecule 1 - RETINAL DEHYDROGENASE 1
    ChainsA
    EC Number1.2.1.36
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneALDH1A1, ALDC, ALDH1, PUMB1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRALDH1,ALDH-E1,ALHDII,ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER A1,ALDEHYDE DEHYDROGENASE,CYTOSOLIC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3YB2Ligand/IonYTTERBIUM (III) ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3YB-1Ligand/IonYTTERBIUM (III) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:166 , ILE A:167 , PRO A:168 , TRP A:169 , ASN A:170 , LYS A:193 , ALA A:195 , GLU A:196 , GLY A:226 , GLY A:230 , ALA A:231 , PHE A:244 , GLY A:246 , SER A:247 , VAL A:250 , ILE A:254 , GLU A:269 , LEU A:270 , GLY A:271 , CYS A:303 , GLU A:349 , GLN A:350 , LYS A:353 , GLU A:400 , PHE A:402 , YB A:5503 , CL A:5504 , HOH A:5707 , HOH A:5748 , HOH A:5778 , HOH A:5806binding site for residue NAI A 5501
2AC2SOFTWAREHOH A:5645 , HOH A:5675 , HOH A:5677 , HOH A:5813 , HOH A:5814 , HOH A:5815 , HOH A:5816binding site for residue YB A 5502
3AC3SOFTWARENAI A:5501 , CL A:5504 , CL A:5505 , CL A:5506 , HOH A:5806binding site for residue YB A 5503
4AC4SOFTWARENAI A:5501 , YB A:5503 , CL A:5505 , CL A:5506binding site for residue CL A 5504
5AC5SOFTWAREYB A:5503 , CL A:5504 , CL A:5506 , HOH A:5806binding site for residue CL A 5505
6AC6SOFTWAREGLU A:349 , YB A:5503 , CL A:5504 , CL A:5505 , HOH A:5806binding site for residue CL A 5506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WB9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WB9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WB9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WB9)

(-) Exons   (0, 0)

(no "Exon" information available for 4WB9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhh.....eeeee.hhhhhhhhhhhhhhh...eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhh.eeee...ee.....ee..eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhh.eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wb9 A   9 LPVLLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTVKISQKNS 501
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498   

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WB9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WB9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WB9)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AL1A1_HUMAN | P003524wj9 4wp7 4wpn 4x4l 5ac2 5l2m 5l2n 5l2o

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WB9)