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(-) Description

Title :  COMPLEX OF THE FIMH LECTIN WITH A C-LINKED PARA-BIPHENYL ETHYLENE ALPHA-D-MANNOSIDE IN SOAKED TRIGONAL CRYSTALS AT 2.45 A RESOLUTION
 
Authors :  J. De Ruyck, J. Bouckaert
Date :  27 Jul 15  (Deposition) - 09 Mar 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sugar Binding Protein, Bacterial Adhesin, Type 1 Fimbriae, Urinary Tract Infection, Variable Immunoglobulin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. De Ruyck, M. F. Lensink, J. Bouckaert
Structures Of C-Mannosylated Anti-Adhesives Bound To The Type 1 Fimbrial Fimh Adhesin
Iucrj V. 3 163 2016
PubMed-ID: 27158502  |  Reference-DOI: 10.1107/S2052252516002487

(-) Compounds

Molecule 1 - FIMH
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Expression System Vector Type: PLASMID
    Fragment: LECTIN DOMAIN, UNP RESIDUES 22-179
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 364106
    Strain: UTI89

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
18L82Ligand/Ion(2R,3S,4R,5S,6R)-2-(HYDROXYMETHYL)-6-[(Z)-3-(4-PHENYLPHENYL)PROP-2-ENYL]OXANE-3,4,5-TRIOL
2NI2Ligand/IonNICKEL (II) ION
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
18L81Ligand/Ion(2R,3S,4R,5S,6R)-2-(HYDROXYMETHYL)-6-[(Z)-3-(4-PHENYLPHENYL)PROP-2-ENYL]OXANE-3,4,5-TRIOL
2NI-1Ligand/IonNICKEL (II) ION
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
18L81Ligand/Ion(2R,3S,4R,5S,6R)-2-(HYDROXYMETHYL)-6-[(Z)-3-(4-PHENYLPHENYL)PROP-2-ENYL]OXANE-3,4,5-TRIOL
2NI-1Ligand/IonNICKEL (II) ION
3SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:1 , ILE A:13 , ASN A:46 , ASP A:47 , TYR A:48 , THR A:51 , ILE A:52 , ASP A:54 , GLN A:133 , ASN A:135 , TYR A:137 , ASP A:140 , HOH A:2001 , HOH A:2113 , HOH A:2116BINDING SITE FOR RESIDUE 8L8 A 201
2AC2SOFTWAREHIS A:45 , ASP A:47 , HOH A:2043 , HOH A:2044 , HOH A:2045 , HOH A:2048BINDING SITE FOR RESIDUE NI A 301
3AC3SOFTWAREPHE B:1 , ILE B:13 , ASN B:46 , ASP B:47 , TYR B:48 , THR B:51 , ILE B:52 , ASP B:54 , GLN B:133 , ASN B:135 , TYR B:137 , ASP B:140 , PHE B:142 , HOH B:2001BINDING SITE FOR RESIDUE 8L8 B 201
4AC4SOFTWAREHIS B:45 , ASP B:47 , HOH B:2045 , HOH B:2046 , HOH B:2047 , HOH B:2105BINDING SITE FOR RESIDUE NI B 301
5AC5SOFTWAREPRO B:91 , ARG B:92BINDING SITE FOR RESIDUE SO4 B1159
6AC6SOFTWAREGLN A:59 , ARG A:60 , HOH A:2062 , LYS B:4 , HOH B:2009BINDING SITE FOR RESIDUE SO4 A1159
7AC7SOFTWAREVAL A:112 , SER A:113 , TYR B:55 , ARG B:92 , ARG B:132BINDING SITE FOR RESIDUE SO4 A1160

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:3 -A:44
2B:3 -B:44

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:7 -Gly A:8
2Phe A:84 -Pro A:85
3Pro A:157 -Thr A:158
4Phe B:84 -Pro B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AAL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AAL)

(-) Exons   (0, 0)

(no "Exon" information available for 5AAL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aal A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee.....eeeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aal B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AAL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AAL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AAL)

(-) Gene Ontology  (2, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q6JKW3_ECOLX | Q6JKW3: 5ab1
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(-) Related Entries Specified in the PDB File

5aap COMPLEX OF THE FIMH LECTIN WITH A C-LINKED PARA- BIPHENYL METHYLENE ALPHA-D-MANNOSIDE
5abz COMPLEX OF THE FIMH LECTIN WITH A C-LINKED NAPHTYL ALPHA-D-MANNOSIDE IN SOAKED TRIGONAL CRYSTALS AT 2. 40 A RESOLUTION