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(-) Description

Title :  CRYSTAL STRUCTURE OF SGCC5 PROTEIN FROM STREPTOMYCES GLOBISPORUS (COMPLEX WITH (R)-(-)-1-(2-NAPHTHYL)-1,2-ETHANEDIOL AND SUCROSE)
 
Authors :  K. Michalska, L. Bigelow, R. Jedrzejczak, G. Babnigg, J. Lohman, M. Ma, C. -Y. Chang, B. Shen, A. Joachimiak, Midwest Center For Structura Genomics (Mcsg), Enzyme Discovery For Natural Product Biosyn (Natpro)
Date :  20 May 15  (Deposition) - 17 Jun 15  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  C-1027 Synthesis, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, L. Bigelow, R. Jedrzejczak, G. Babnigg, J. Lohman, M. Ma J. Rudolf, C. -Y. Chang, B. Shen, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg), Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Crystal Structure Of Sgcc5 Protein From Streptomyces Globisporus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - C-DOMAIN TYPE II PEPTIDE SYNTHETASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG73
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES GLOBISPORUS
    Organism Taxid: 1908

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
14T72Ligand/Ion(1R)-1-(NAPHTHALEN-2-YL)ETHANE-1,2-DIOL
2CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3SO45Ligand/IonSULFATE ION
4SUC2Ligand/IonSUCROSE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
14T71Ligand/Ion(1R)-1-(NAPHTHALEN-2-YL)ETHANE-1,2-DIOL
2CXS-1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3SO43Ligand/IonSULFATE ION
4SUC1Ligand/IonSUCROSE
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
14T71Ligand/Ion(1R)-1-(NAPHTHALEN-2-YL)ETHANE-1,2-DIOL
2CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3SO42Ligand/IonSULFATE ION
4SUC1Ligand/IonSUCROSE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:43 , HIS A:154 , PHE A:291 , ILE A:308 , VAL A:367 , ILE A:403 , ASP A:405 , HOH A:602 , HOH A:644 , HOH A:649binding site for residue 4T7 A 501
02AC2SOFTWAREILE A:45 , VAL A:46 , TRP A:241 , ARG A:243 , GLN A:369 , VAL A:371 , TRP A:391 , ARG A:393 , SER A:410 , ALA A:420 , GLY A:421 , SER A:422 , HOH A:606 , HOH A:622 , HOH A:640 , HOH A:649 , HOH A:650 , HOH A:653 , HOH A:655binding site for residue SUC A 502
03AC3SOFTWARESER A:360 , ASP A:361 , ASN A:362 , HIS A:363binding site for residue SO4 A 503
04AC4SOFTWAREARG A:176binding site for residue SO4 A 504
05AC5SOFTWAREARG A:113binding site for residue SO4 A 505
06AC6SOFTWARETYR B:43 , HIS B:154 , PHE B:291 , ILE B:308 , VAL B:367 , ILE B:403 , PRO B:404 , ASP B:405 , HOH B:658binding site for residue 4T7 B 501
07AC7SOFTWAREILE B:45 , VAL B:46 , TRP B:241 , ARG B:243 , GLN B:369 , VAL B:371 , TRP B:391 , ARG B:393 , SER B:410 , GLY B:421 , SER B:422 , HOH B:614 , HOH B:623 , HOH B:634 , HOH B:635 , HOH B:648 , HOH B:679 , HOH B:684binding site for residue SUC B 502
08AC8SOFTWARESER B:360 , ASP B:361 , ASN B:362 , HIS B:363binding site for residue SO4 B 503
09AC9SOFTWAREARG B:113 , GLN B:218binding site for residue SO4 B 504
10AD1SOFTWAREGLN B:394 , LEU B:395 , SER B:396 , GLN B:397 , ALA B:398 , TYR B:425 , ASP B:432binding site for residue CXS B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZXW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:131 -Pro A:132
2Leu B:131 -Pro B:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZXW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZXW)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZXW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh........hhhhh...eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee......eeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eee...hhhhh....eeeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhh.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee.........eee..eeeee.................eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zxw A  15 PPLSFHQEFLCMFDSGNDGADVGPFGPMYHIVGAWRLTGGIDEETLREALGDVVVRHEALRTSLVREGGTHRPEILPAGPAALEVRDLGDVDESERVRRGEELLNEVESTGLSVRELPLLRAVLGRFDQKDAVLVLIAHHTAADAWAMHVIARDLLNLYAARRGNPVPPLPEPAQHAEFARWEREAAEAPRVAVSKEFWRKRLQGARIIGLETDIPRSAGLPKGTAWQRFAVRGELADAVVEFSRAAKCSPFMTMFAAYQVLLHRRTGELDITVPTFSGGRNNSRFEDTVGSFINFLPLRTDLSGCASFREVVLRTRTTCGEAFTHELPFSRLIPEVPELMASAASDNHQISVFQAVHAPASEGPEQAGDLTYSKIWERQLSQAEGSDIPDGVLWSIHIDPSGSMAGSLGYNTNRFKDETMAAFLADYLDVLENAVARPDAPF 457
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454   


Chain B from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.........hhhhh...eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee......eeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eee...hhhhh....eeeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhh.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......eeeeeeee.........eee..eeeee.................eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zxw B  15 PPLSFHQEFLCMFDSGNDGADVGPFGPMYHIVGAWRLTGGIDEETLREALGDVVVRHEALRTSLVREGGTHRPEILPAGPAALEVRDLGDVDESERVRRGEELLNEVESTGLSVRELPLLRAVLGRFDQKDAVLVLIAHHTAADAWAMHVIARDLLNLYAARRGNPVPPLPEPAQHAEFARWEREAAEAPRVAVSKEFWRKRLQGARIIGLETDIPRSAGLPKGTAWQRFAVRGELADAVVEFSRAAKCSPFMTMFAAYQVLLHRRTGELDITVPTFSGGRNNSRFEDTVGSFINFLPLRTDLSGCASFREVVLRTRTTCGEAFTHELPFSRLIPEVPELMASAASDNHQISVFQAVHAPASEGPEQAGDLTYSKIWERQLSQAEGSDIPDGVLWSIHIDPSGSMAGSLGYNTNRFKDETMAAFLADYLDVLENAVARPDAPF 457
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZXW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZXW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZXW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZXW)

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 Related Entries

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UniProtKB/TrEMBL
        Q8GMG2_STRGL | Q8GMG2: 4znm

(-) Related Entries Specified in the PDB File

4znm 4ZNM IS AN APO FORM RELATED ID: MCSG-APC109083 RELATED DB: TARGETTRACK