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(-) Description

Title :  CRYSTAL STRUCTURE OF SGCC5 PROTEIN FROM STREPTOMYCES GLOBISPORUS (APO FORM)
 
Authors :  K. Michalska, L. Bigelow, R. Jedrzejczak, G. Babnigg, J. Lohman, M. Ma, C. -Y. Chang, B. Shen, A. Joachimiak, Midwest Center For Structura Genomics (Mcsg), Enzyme Discovery For Natural Product Biosyn (Natpro)
Date :  04 May 15  (Deposition) - 27 May 15  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  C-1027 Synthesis, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Michalska, L. Bigelow, R. Jedrzejczak, G. Babnigg, J. Lohman, M. Ma J. Rudolf, C. -Y. Chang, B. Shen, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg), Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Crystal Structure Of Sgcc5 Protein From Streptomyces Globisporus (Apo Form)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - C-DOMAIN TYPE II PEPTIDE SYNTHETASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG73
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES GLOBISPORUS
    Organism Taxid: 1908

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric Unit (4, 23)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
3MSE16Mod. Amino AcidSELENOMETHIONINE
4NA3Ligand/IonSODIUM ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:127 , GLU A:130 , LEU A:131 , PRO A:132 , HOH A:739binding site for residue NA A 501
2AC2SOFTWAREASN A:179 , HOH A:683 , HOH A:772 , SER B:232 , HOH B:810binding site for residue NA A 502
3AC3SOFTWAREHIS A:154 , ASP A:158 , ALA A:159binding site for residue CL A 503
4AC4SOFTWARESER B:127 , GLU B:130 , LEU B:131 , PRO B:132 , HOH B:811binding site for residue NA B 501
5AC5SOFTWAREHIS B:154 , ALA B:159binding site for residue CL B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZNM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:131 -Pro A:132
2Leu B:131 -Pro B:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZNM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZNM)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZNM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.........hhhhh...eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee......eeeeee....hhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eee...hhhhh....eeeeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhh.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhh...........eeeeeeee.........eee..eeeee.................eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4znm A  15 PPLSFHQEFLCmFDSGNDGADVGPFGPmYHIVGAWRLTGGIDEETLREALGDVVVRHEALRTSLVREGGTHRPEILPAGPAALEVRDLGDVDESERVRRGEELLNEVESTGLSVRELPLLRAVLGRFDQKDAVLVLIAHHTAADAWAmHVIARDLLNLYAARRGNPVPPLPEPAQHAEFARWEREAAEAPRVAVSKEFWRKRLQGARIIGLETDIPRSAGLPKGTAWQRFAVRGELADAVVEFSRAAKCSPFmTmFAAYQVLLHRRTGELDITVPTFSGGRNNSRFEDTVGSFINFLPLRTDLSGCASFREVVLRTRTTcGEAFTHELPFSRLIPEVPELmASAASDNHQISVFQAVHAPASEGPEQAGDLTYSKIWERQLSQAEGSDIPDGVLWSIHIDPSGSmAGSLGYNTNRFKDETmAAFLADYLDVLENAVARPDAPF 457
                                    24 |      34       |44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264  | |  274       284       294       304       314       324       334       344       354|      364       374       384       394       404       414    |  424       434|      444       454   
                                      26-MSE          42-MSE                                                                                                                 162-MSE                                                                                                  267-MSE                                                            334-CSO              355-MSE                                                         419-MSE         435-MSE                  
                                                                                                                                                                                                                                                                                        269-MSE                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh.........hhhhh...eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee......eeeeee....hhhhhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eee...hhhhh....eeeeeeeehhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhh.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......eeeeeeee.........eee..eeeee.................eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4znm B  15 PPLSFHQEFLCmFDSGNDGADVGPFGPmYHIVGAWRLTGGIDEETLREALGDVVVRHEALRTSLVREGGTHRPEILPAGPAALEVRDLGDVDESERVRRGEELLNEVESTGLSVRELPLLRAVLGRFDQKDAVLVLIAHHTAADAWAmHVIARDLLNLYAARRGNPVPPLPEPAQHAEFARWEREAAEAPRVAVSKEFWRKRLQGARIIGLETDIPRSAGLPKGTAWQRFAVRGELADAVVEFSRAAKCSPFmTmFAAYQVLLHRRTGELDITVPTFSGGRNNSRFEDTVGSFINFLPLRTDLSGCASFREVVLRTRTTcGEAFTHELPFSRLIPEVPELmASAASDNHQISVFQAVHAPASEGPEQAGDLTYSKIWERQLSQAEGSDIPDGVLWSIHIDPSGSmAGSLGYNTNRFKDETmAAFLADYLDVLENAVARPDAPFT 458
                                    24 |      34       |44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264  | |  274       284       294       304       314       324       334       344       354|      364       374       384       394       404       414    |  424       434|      444       454    
                                      26-MSE          42-MSE                                                                                                                 162-MSE                                                                                                  267-MSE                                                            334-CSO              355-MSE                                                         419-MSE         435-MSE                   
                                                                                                                                                                                                                                                                                        269-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZNM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZNM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZNM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZNM)

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