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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE SQT1 BOUND TO THE N-TERMINUS OF THE RIBOSOMAL PROTEIN L10
 
Authors :  P. Pausch, F. Altegoer, G. Bange
Date :  07 May 15  (Deposition) - 01 Jul 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Chaperone, Ribosomal Biogenesis, Wd40 - Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Pausch, U. Singh, Y. L. Ahmed, B. Pillet, G. Murat, F. Altegoer, G. Stier, M. Thoms, E. Hurt, I. Sinning, G. Bange, D. Kressler
Co-Translational Capturing Of Nascent Ribosomal Proteins By Their Dedicated Chaperones.
Nat Commun V. 6 7494 2015
PubMed-ID: 26112308  |  Reference-DOI: 10.1038/NCOMMS8494

(-) Compounds

Molecule 1 - RIBOSOME ASSEMBLY PROTEIN SQT1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETDUET-1
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 53-431
    Gene: SQT1, YIR012W, YIB12W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
 
Molecule 2 - 60S RIBOSOMAL PROTEIN L10
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET-1
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-20
    Gene: RPL10, GRC5, QSR1, YLR075W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RPL10, L9,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX SUBUNIT VI-REQUIRING PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZOX)

(-) Sites  (0, 0)

(no "Site" information available for 4ZOX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZOX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:97 -Pro A:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZOX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZOX)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZOX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee......eeeeee.....eeeeee....eeeee.......eeeee......eeeeee.....eeeeee...eeeeeeeehhhheeeeeeeee....eeeeee......eeeeee....eeeeee......eeeeeee......eeeeeee.........eeeeee....eeeee.....eeeeehhhhh......eeeeee.hhhhh.....eeeeee...eeeeee......eeeeee........hhhhh.eeeeeee....eeeeee...eeeeee.....eeeeee....eeeeeee..eeeeee....eeeee.....eeeee......eeeeeee...........eeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zox A  53 MSNNSLTYFDKHTDSVFAIGHHPNLPLVCTGGGDNLAHLWTSHSQPPKFAGTLTGYGESVISCSFTSEGGFLVTADMSGKVLVHMGQKGGAQWKLASQMQEVEEIVWLKTHPTIARTFAFGATDGSVWCYQINEQDGSLEQLMSGFVHQQDCSMGEFINTDKGENTLELVTCSLDSTIVAWNCFTGQQLFKITQAEIKGLEAPWISLSLAPETLTKGNSGVVACGSNNGLLAVINCNNGGAILHLSTVIELKPEQDELDASIESISWSSKFSLMAIGLVCGEILLYDTSAWRVRHKFVLEDSVTKLMFDNDDLFASCINGKVYQFNARTGQEKFVCVGHNMGVLDFILLHPVANTGTEQKRKVITAGDEGVSLVFEVPN 431
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422         


Chain B from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ...hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4zox B   2 ARRPARCYRYQKNK  15
                                    11
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZOX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZOX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZOX)

(-) Gene Ontology  (14, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln A:97 - Pro A:98   [ RasMol ]  
 

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  SQT1_YEAST | P35184
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL10_YEAST | P41805: 1k5y 3j6x 3j6y 3j77 3j78 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v4b 4v6i 4v7r 4v88 4v8t 4v8y 4v8z 4v91 5apn 5apo 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5gak 5i4l 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5t62 5t6r 5tga 5tgm
        SQT1_YEAST | P35184: 4zov 5ams

(-) Related Entries Specified in the PDB File

4zov