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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE SQT1
 
Authors :  P. Pausch, F. Altegoer, G. Bange
Date :  07 May 15  (Deposition) - 01 Jul 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Chaperone, Ribosomal Biogenesis, Wd40 -Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Pausch, U. Singh, Y. L. Ahmed, B. Pillet, G. Murat, F. Altegoer, G. Stier, M. Thoms, E. Hurt, I. Sinning, G. Bange, D. Kressler
Co-Translational Capturing Of Nascent Ribosomal Proteins By Their Dedicated Chaperones.
Nat Commun V. 6 7494 2015
PubMed-ID: 26112308  |  Reference-DOI: 10.1038/NCOMMS8494

(-) Compounds

Molecule 1 - RIBOSOME ASSEMBLY PROTEIN SQT1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 53-431
    Gene: SQT1, YIR012W, YIB12W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZOV)

(-) Sites  (0, 0)

(no "Site" information available for 4ZOV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZOV)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gln A:97 -Pro A:98
2Gln B:97 -Pro B:98
3Lys B:140 -Gly B:141
4Asp B:308 -Glu B:309
5Thr B:409 -Glu B:410

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZOV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZOV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZOV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee......eeeeee.....eeeeee....eeeee.......eeeee......eeeeee......eeeee...eeeeeeee....eeeeeeeee....ee..........eeeeee....eeeeee......eeeeeee......eeeeeee.........eeeeee....eeeee.....eeeeehhhhhh.........ee.hhhhh.....eee......eeeeee......eeeeee........hhhhh.eeeeeee....eeeeee...eeeeee.....eeeeee....eeeeeee..eeeeee....eeeee.....eeeee......eeeeeee...........eeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zov A  53 MSNNSLTYFDKHTDSVFAIGHHPNLPLVCTGGGDNLAHLWTSHSQPPKFAGTLTGYGESVISCSFTSEGGFLVTADMSGKVLVHMGQKGGAQWKLASQMQEVEEIVWLKTHPTIARTFAFGATDGSVWCYQINEQDGSLEQLMSGFVHQQDCSMGEFINTDKGENTLELVTCSLDSTIVAWNCFTGQQLFKITQAEIKGLEAPWISLSLAPETLTKGNSGVVACGSNNGLLAVINCNNGGAILHLSTVIELKPEQDELDASIESISWSSKFSLMAIGLVCGEILLYDTSAWRVRHKFVLEDSVTKLMFDNDDLFASCINGKVYQFNARTGQEKFVCVGHNMGVLDFILLHPVANTGTEQKRKVITAGDEGVSLVFEVPN 431
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422         


Chain B from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee......eeeeee.....eeeeee....eeeee.......eeeee......eeeeee.....eeeeee...eeeeeee......eeeeeeee....eeeeee......eeeeee....eeeeee......eeeeeee......eeeeeee.........eeeeee....eeeee....eeeeeehhhhhh.....eeeeee.hhhhh.....eeeeee...eeeeee......eeeeee........eeeeeee....eeeeee..eeeeeee....eeeeee.....eeeeeee..eeeeee....eeeee.....eeeee......eeeeeee...........eeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zov B  53 MSNNSLTYFDKHTDSVFAIGHHPNLPLVCTGGGDNLAHLWTSHSQPPKFAGTLTGYGESVISCSFTSEGGFLVTADMSGKVLVHMGQKGGAQWKLASQMQEVEEIVWLKTHPTIARTFAFGATDGSVWCYQINEQDGSLEQLMSGFVHQQDCSMGEFINTDKGENTLELVTCSLDSTIVAWNCFTGQQLFKITQAEIKGLEAPWISLSLAPETLTKGNSGVVACGSNNGLLAVINCNNGGAILHLSTVIDELDASIESISWSSKFSLMAIGLVCGEILLYDTSAWRVRHKFVLEDSVTKLMFDNDDLFASCINGKVYQFNARTGQEKFVCVGHNMGVLDFILLHPVANTGTEQKRKVITAGDEGVSLVFEVPN 431
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       308       318       328       338       348       358       368       378       388       398       408       418       428   
                                                                                                                                                                                                                                                                                  301|                                                                                                                           
                                                                                                                                                                                                                                                                                   308
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZOV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZOV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZOV)

(-) Gene Ontology  (5, 5)

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  Sites
(no "Sites" information available for 4zov)
 
  Cis Peptide Bonds
    Asp B:308 - Glu B:309   [ RasMol ]  
    Gln A:97 - Pro A:98   [ RasMol ]  
    Gln B:97 - Pro B:98   [ RasMol ]  
    Lys B:140 - Gly B:141   [ RasMol ]  
    Thr B:409 - Glu B:410   [ RasMol ]  
 
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  SQT1_YEAST | P35184
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SQT1_YEAST | P35184: 4zox 5ams

(-) Related Entries Specified in the PDB File

4zn4