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(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA DSBA E82I: CRYSTAL II
 
Authors :  R. M. Mcmahoh, J. L. Martin
Date :  01 May 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Thioredoxin Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Mcmahon, M. Coincon, S. Tay, B. Heras, C. J. Morton, M. J. Scanlon, J. L. Martin
Sent Packing: Protein Engineering Generates A New Crystal Form Of Pseudomonas Aeruginosa Dsba1 Suitable For Fragment-Based Lead Discovery.
Acta Crystallogr. , Sect. D V. 71 2386 2015
PubMed: search  |  Reference-DOI: 10.1107/S1399004715018519

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 22-211
    Gene: DSBA, PA5489
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Other Details: THE FIRST THREE RESIDUES (SNA) DERIVE FROM AN EXPRESSION TAG
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:39 , THR A:151 , GLY A:152 , ASP A:165 , GLY A:167 , ALA A:188 , HOH A:309 , HOH A:317 , HOH A:329 , HOH A:433 , HOH A:447binding site for residue MES A 201
2AC2SOFTWARECYS A:37 , TRP A:71 , GLY A:152 , VAL A:153 , ARG A:187 , HOH A:318 , HOH A:372 , HOH A:385 , HOH A:399binding site for residue GOL A 202
3AC3SOFTWAREPRO A:38 , HIS A:39 , GLU A:184 , ARG A:187 , HOH A:306 , HOH A:342binding site for residue GOL A 203
4AC4SOFTWAREGLY A:117 , ARG A:163 , PHE A:164 , ASP A:165 , GOL A:205 , HOH A:303 , HOH A:352 , HOH A:390 , HOH A:439binding site for residue GOL A 204
5AC5SOFTWAREGLY A:117 , GLN A:149 , VAL A:150 , THR A:151 , ARG A:163 , GOL A:204 , HOH A:303 , HOH A:352binding site for residue GOL A 205

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:37 -A:40

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:153 -Pro A:154

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZL8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZL8)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZL8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee............eeeeeee...hhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee...eeeehhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zl8 A   5 DYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLISMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAK 191
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZL8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZL8)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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    Val A:153 - Pro A:154   [ RasMol ]  
 

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  4zl8
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  DSBA_PSEAE | P0C2B2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DSBA_PSEAE | P0C2B2: 2mbt 3h93 4zl7 4zl9 5dch 5tlq

(-) Related Entries Specified in the PDB File

2mbt 2MBT IS THE NMR SOLUTION STRUCTURE OF THE WILD TYPE SEQUENCE OF THIS PROTEIN
3h93 3H93 IS THE STRUCTURE OF THE WILD TYPE SEQUENCE OF THIS PROTEIN
4zl7
4zl9