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(-) Description

Title :  STRUCTURE OF HUMAN ANTIZYME INHIBITOR IN COMPLEX WITH A C-TERMINAL FRAGMENT OF ANTIZYME
 
Authors :  S. F. Chen, H. Y. Wu, N. L. Chan
Date :  24 Apr 15  (Deposition) - 02 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.81
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Tim Barrel Domain, Beta-Sheet Domain, Inhibition, Antizyme, Plasma, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Y. Wu, S. F. Chen, J. Y. Hsieh, F. Chou, Y. H. Wang, W. T. Lin, P. Y. Lee, Y. J. Yu, L. Y. Lin, T. S. Lin, C. L. Lin, G. Y. Liu, S. R. Tzeng, H. C. Hung, N. L. Chan
Structural Basis Of Antizyme-Mediated Regulation Of Polyamine Homeostasis
Proc. Natl. Acad. Sci. Usa V. 112 11229 2015
PubMed-ID: 26305948  |  Reference-DOI: 10.1073/PNAS.1508187112

(-) Compounds

Molecule 1 - ANTIZYME INHIBITOR 1
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Plasmid28B-HAZIN
    Expression System StrainBL-21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePET-28B
    FragmentHUMAN ORNITHINE DECARBOXYLASE ANTIZYME INHIBITOR, UNP RESIDUES 2-437
    GeneAZIN1, OAZI, OAZIN
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAZI,ORNITHINE DECARBOXYLASE ANTIZYME INHIBITOR
 
Molecule 2 - ORNITHINE DECARBOXYLASE ANTIZYME 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Plasmid21B-AZ110
    Expression System StrainBL-21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePET-21B
    FragmentHUMAN ORNITHINE DECARBOXYLASE ANTIZYME, UNP RESIDUES 110- 228
    GeneOAZ1, OAZ
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymODC-AZ

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZGZ)

(-) Sites  (0, 0)

(no "Site" information available for 4ZGZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZGZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZGZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZGZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZGZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZGZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhh.eeee.hhhhhhhhhhhh.hhh.eee.....hhhhhhhhhhhh..eeee.hhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhh......eeee..hhhhhh..eeeeeeeeeee...eeeee.......hhhhhh..eee.....eeeeee.............eee.......eeee...........hhhhh....eeeee.hhhhhhhhhh.....hhhhh...ee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgz A  10 YSVGLLDEGTDLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSAPAVLEILAALGTGFACSSKNEMALVQELGVPPENIIYISPCKQVSQIKYAAKVGVNILTCDNEIELKKIARNHPNAKVLLHIATEDMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKESQVYVHALSDARCVFDMAGEIGFTMNMLDIGGGFTGTEFQLEEVNHVISPLLDIYFPEGSGVKIISEPGSYYVSSAFTLAVNIIAKKVVAFMYYMNDGVYGSFASKLSTIPEVHKKPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYYMMSFSDWYEMQDAGITSDSMMKNFFFV 432
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159|      177       187       197       207       217       227       237       247       257       267       277       287     ||314       324    || 338  ||   353       363       373       383       393       403       413       423         
                                                                                                                                                                               159|                                                                                                                          293|               329|    341|                                                                                     
                                                                                                                                                                                168                                                                                                                           311                334     347                                                                                     

Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeeee........hhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhhhhhh.ee.............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4zgz B 126 KRINWRTVLSGGSLYIEIPGGALPEGSKDSFAVLLEFAEEQLRADHVFICFHKNREDRAALLRTFSFLGFEIVRPGHPLVPKRPDACFMAYTFE 219
                                   135       145       155       165       175       185       195       205       215    

Chain C from PDB  Type:PROTEIN  Length:389
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh.eeee.hhhhhhhhhhhh.hhh.eee.....hhhhhhhhhhh...eeee.hhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhh........ee..hhhhhh..eeeeeeeeeee...eeeee........hhhhh..eee.....eeeeee.............eee.......eeee....................eeeee.hhhhhhhhhh.....hhhhh...ee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zgz C  10 YSVGLLDEGTDLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSAPAVLEILAALGTGFACSSKNEMALVQELGVPPENIIYISPCKQVSQIKYAAKVGVNILTCDNEIELKKIARNHPNAKVLLHIATEDMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKESQVYVHALSDARCVFDMAGEIGFTMNMLDIGGGFTGTEFQLEEVNHVISPLLDIYFPEGSGVKIISEPGSYYVSSAFTLAVNIIAKKVVAFMYYMNDGVYGSFASKLSTIPEVHKKPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYYMMSFSDWYEMQDAGITSDSMMKNFFFV 432
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159|      177       187       197       207       217       227       237       247       257       267       277       287     ||314       324    || 338  ||   353       363       373       383       393       403       413       423         
                                                                                                                                                                               159|                                                                                                                          293|               329|    341|                                                                                     
                                                                                                                                                                                168                                                                                                                           311                334     347                                                                                     

Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeee........hhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhhhhhh.ee.............eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4zgz D 125 AKRINWRTVLSGGSLYIEIPGGALPEGSKDSFAVLLEFAEEQLRADHVFICFHKNREDRAALLRTFSFLGFEIVRPGHPLVPKRPDACFMAYTFE 219
                                   134       144       154       164       174       184       194       204       214     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZGZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZGZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZGZ)

(-) Gene Ontology  (19, 23)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OAZ1_HUMAN | P543684zgy 5bwa

(-) Related Entries Specified in the PDB File

1zo0 RAT ORNITHINE DECARBOXYLASE ANTIZYME
3btn MOUSE ORNITHINE DECARBOXYLASE ANTIZYME INHIBITOR
4qcg