4ZD4 - JenaLib

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Title :   CATALYTIC DOMAIN OF SST2 F403W MUTANT

Authors :   A. N. Bueno

Date :   16 Apr 15 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.63

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Helix-Beta-Helix Sandwich Zinc Metalloprotease Endosome Ubiquitin, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. N. Bueno
Structure Of The Catalytic Domain Of Sst2 F403W Mutant At 1. 63 Angstroms Resolution
To Be Published
PubMed: search

Molecule 1 - AMSH-LIKE PROTEASE SST2
	Chains	:	A, B
	EC Number	:	3.4.19.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6-P1
	Expression System Strain	:	ROSETTA
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 245-435
	Gene	:	SST2, SPAC19B12.10
	Mutation	:	YES
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	284812
	Strain	:	972 / ATCC 24843
	Synonym	:	SUPPRESSOR OF STE12 DELETION PROTEIN 2

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 17)

No.	Name	Count	Type	Full Name
1	DTT	1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
2	EDO	11	Ligand/Ion	1,2-ETHANEDIOL
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	DTT	-1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	DTT	1	Ligand/Ion	2,3-DIHYDROXY-1,4-DITHIOBUTANE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:286 , THR A:316 , CYS A:317 , TRP A:339 , VAL A:353 , ASP A:354 , THR A:357 , HOH A:622	binding site for residue EDO A 501
02	AC2	SOFTWARE	GLY A:318 , THR A:319 , TYR A:361 , EDO A:503	binding site for residue EDO A 502
03	AC3	SOFTWARE	GLU A:322 , EDO A:502	binding site for residue EDO A 503
04	AC4	SOFTWARE	ASP A:315 , HIS A:343 , GLN A:346 , PHE A:349 , SER A:351 , HOH A:601 , HOH A:603 , HOH A:604	binding site for residue EDO A 504
05	AC5	SOFTWARE	LEU A:335 , THR A:336 , MET A:364	binding site for residue EDO A 505
06	AC6	SOFTWARE	LYS A:409 , THR A:412 , MET A:413	binding site for residue TRS A 506
07	AC7	SOFTWARE	HIS A:341 , HIS A:343 , ASP A:354 , HOH A:603	binding site for residue ZN A 507
08	AC8	SOFTWARE	HIS A:356 , CYS A:397 , HIS A:404 , HIS A:406	binding site for residue ZN A 508
09	AC9	SOFTWARE	GLY B:318 , THR B:319 , TYR B:361 , HOH B:654	binding site for residue EDO B 501
10	AD1	SOFTWARE	LEU B:335 , THR B:336 , MET B:364 , HOH B:619	binding site for residue EDO B 502
11	AD2	SOFTWARE	ASP B:315 , HIS B:343 , GLN B:346 , PHE B:349 , HOH B:605	binding site for residue EDO B 503
12	AD3	SOFTWARE	LYS B:409 , TYR B:411 , THR B:412 , EDO B:505	binding site for residue EDO B 504
13	AD4	SOFTWARE	LYS B:409 , VAL B:410 , TYR B:411 , EDO B:504	binding site for residue EDO B 505
14	AD5	SOFTWARE	LYS B:258 , GLN B:362 , LEU B:363 , PRO B:366 , ASP B:387	binding site for residue EDO B 506
15	AD6	SOFTWARE	LYS B:294 , HIS B:304 , HIS B:332 , GLN B:428	binding site for residue DTT B 507
16	AD7	SOFTWARE	HIS B:341 , HIS B:343 , ASP B:354 , HOH B:608	binding site for residue ZN B 508
17	AD8	SOFTWARE	HIS B:356 , CYS B:397 , HIS B:404 , HIS B:406	binding site for residue ZN B 509

Asymmetric Unit

No.	Residues
1	A:288	-	A:317
2	B:288	-	B:317

Asymmetric Unit

No.	Residues
1	Asp A:387	-	Pro A:388
2	Gln A:416	-	Pro A:417
3	Asp B:387	-	Pro B:388
4	Gln B:416	-	Pro B:417

(no "SAP(SNP)/Variant" information available for 4ZD4)

(no "PROSITE Motif" information available for 4ZD4)

(no "Exon" information available for 4ZD4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....ee..eeee.hhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee..eee....eee.hhhhhhhhhhhh..eeeeeeee........hhhhhhhhhhhhhhh...eeeeeehhhheeeeeee..hhhhhhhhhh.............eee......eeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zd4 A 249 KIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTSGIFRLLDPEGLQTIVKCRKPGLWHPHEGKVYTMVAQPGHVREINSKLQVVDLR 433
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428

Chain B from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....ee..eeee.hhhhhhhhhhhhhhhh....eeeeeeeee..eeeeeeeee.............hhhhhhhhhhhh..eeeeeeee........hhhhhhhhhhhhhhh...eeeeeehhhheeeeeee..hhhhhhhhhh.............eee......eeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zd4 B 249 KIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTSGIFRLLDPEGLQTIVKCRKPGLWHPHEGKVYTMVAQPGHVREINSKLQVVDLR 433
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4ZD4)

(no "CATH Domain" information available for 4ZD4)

(no "Pfam Domain" information available for 4ZD4)

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	Cis Peptide Bonds
		Asp A:387 - Pro A:388	[ RasMol ]
		Asp B:387 - Pro B:388	[ RasMol ]
		Gln A:416 - Pro A:417	[ RasMol ]
		Gln B:416 - Pro B:417	[ RasMol ]

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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	4zd4
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	3.4.19.-
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UniProtKB/Swiss-Prot
	SST2_SCHPO \| Q9P371	:	4jxe 4k1r 4ms7 4msd 4msj 4msm 4msq 4nql 4pqt 4zd5 4zfr 4zft

2znr	CRYSTAL STRUCTURE OF HUMAN AMSH-LP CATALYTIC DOMAIN
3rzu	CRYSTAL STRUCTURE OF HUMAN AMSH CATALYTIC DOMAIN
4fsj	CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN
4jxe	CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN
4ms7	CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN
4zd5

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 17)

Sites (17, 17)

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (14, 14)

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